YRC Public Data Repository - Protein Structure Prediction

Protein:	CDC23_ARATH
Organism:	Arabidopsis thaliana
Length:	579 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC23_ARATH.

Description	E-value	Query Range	Subject Range
gi\|113475191, gi... - gi\|113475191\|ref\|YP_721252.1\| glycosyl transferase family protein [Trichodesmium erythraeum IMS101],...	359.0	[0..27]	[578..15]
gi\|73670079, gi\|... - gi\|73670079\|ref\|YP_306094.1\| TPR repeat-containing protein [Methanosarcina barkeri str. Fusaro], gi\|...	332.0	[0..1]	[579..87]
gi\|33640682, gi\|... - gi\|33862569\|ref\|NP_894129.1\| TPR repeat-containing protein [Prochlorococcus marinus str. MIT 9313], ...	329.0	[0..19]	[578..464]
gi\|91079875 - gi\|91079875\|ref\|XP_967579.1\| PREDICTED: similar to CG10392-PB, isoform B [Tribolium castaneum]	322.0	[0..28]	[540..162]
gi\|56967372, gi\|... - gi\|62821820\|ref\|NP_001017359.1\| O-linked N-acetylglucosamine transferase isoform 1 [Danio rerio], gi...	322.0	[0..25]	[578..22]
gi\|76659271 - gi\|76659271\|ref\|XP_884992.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 7 [...	319.0	[0..25]	[539..22]
gi\|66793439, gi\|... - gi\|66793439\|ref\|NP_001019747.1\| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase [Xe...	316.0	[0..28]	[578..15]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSKECCRNE IRAAIRQLSD RCLYSAAKWA GEQLVGIEQD PSNFTPANTR FQRGSSSIRR  60
   61 RFSTNESIST PLPSVGFSQA ATPLPEEDEA IDGDIYLLAK SYFDC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.552842
Match:	PF04049.4
Description:	No description for PF04049.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.803	N/A	N/A	d.56.1	GroEL-intermediate domain like

Predicted Domain #2

Region A:
Residues: [106-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 REYRRASHML RDQVSKKSLF LRYYALYLAG EKRKEEEMIE LEGPLGKSDA INRELVSLER  60
   61 DLSALRRTG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.221849
Match:	1fchA
Description:	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [175-579]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIDSFGLYLY GVVLKEKGNE SLARASLVES VNSYPWNWSA WSELQSLCTS IEILNSLNLN  60
   61 NHWMKEFFLG NAYQELRMHT ESLAKYEYLQ GIFSFSNYIQ AQTAKAQYSL REFDQVEIMF 120
  121 EELLRNDPYR VEDMDLYSNV LYAKEACAAL SYLAHKVFLT DKYRPESCCI IGNYYSLKGQ 180
  181 HEKAVMYFRR ALKLNKKYLS AWTLMGHEYV EMKNTPAAID AYRRAVDINP TDYRAWYGLG 240
  241 QAYEMMGMPF YALHYFRKSI FFLPNDSRLW IAMAKCYQTE QLYMLEEAIK CYKRAVNCTD 300
  301 TEGIALNQLA KLHQKLGRNE EAAYYFEKDL ERMDAEGLEG PNMFEALVFL ATHFKNHKKF 360
  361 EEAEVYCTRL LDYSGPEKEK AKSLLRGIRM AQTGFPSMDL EHFPI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.69897
Match:	1w3bA
Description:	The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits