YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20260644, gi\|...
Organism:	Arabidopsis thaliana
Length:	392 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20260644, gi|....

Description	E-value	Query Range	Subject Range
gi\|21536494 - gi\|21536494\|gb\|AAM60826.1\| unknown [Arabidopsis thaliana]	472.0	[0..1]	[392..1]
PLS2_BOVIN - Phospholipid scramblase 2 OS=Bos taurus GN=PLSCR2 PE=2 SV=1	308.0	[0..111]	[378..19]
gi\|215678836, gi... - gi\|38345767\|emb\|CAE03467.2\| OSJNBa0083N12.4 [Oryza sativa (japonica cultivar-group)], gi\|222629475\|g...	304.0	[0..81]	[392..32]
gi\|119599335 - gi\|119599335\|gb\|EAW78929.1\| phospholipid scramblase 1, isoform CRA_g [Homo sapiens] gi\|114589691, gi... - gi\|114589693\|ref\|XP_516804.2\| PREDICTED: similar to hMmTRA1b isoform 4 [Pan troglodytes], gi\|1145896...	304.0	[0..106]	[383..30]
gi\|123979952, gi... - gi\|123994715\|gb\|ABM84959.1\| phospholipid scramblase 1 [synthetic construct], gi\|123979952\|gb\|ABM8180... PLSCR1 - phospholipid scramblase 1	303.0	[0..106]	[383..37]
gi\|118786570, gi... - gi\|118786570\|ref\|XP_315500.3\| ENSANGP00000022475 [Anopheles gambiae str. PEST], gi\|116126387\|gb\|EAA4...	301.0	[0..104]	[389..53]
gi\|62078921, gi\|... - gi\|62078921\|ref\|NP_001014116.1\| phospholipid scramblase 2 [Rattus norvegicus], gi\|50926953\|gb\|AAH790...	298.0	[0..68]	[378..13]
gi\|50752231, gi\|... - gi\|50752231\|ref\|XP_422696.1\| PREDICTED: similar to Phospholipid scramblase 1 (PL scramblase 1) (Ca(2...	296.0	[0..88]	[384..9]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYLSRRSLS SLLRSGFNLR GDLTAAAVSC SSLFSDADGG IKKLHSRAGN AVLWRNSQLC  60
   61 SSQGSFFGRG GQVSGSVFRC FCSGSDTSPP SLDRKFLAQL WVADKKKLKA MEKRYKKASK 120
  121 HRNYTENDGF DVH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.807	a.118.1	ARM repeat

Predicted Domain #2

Region A:
Residues: [134-392]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FETVEPTVEQ PPVSQSMSGL LKPKTSDEAK IATLLARSNL LVTRDIEWAN LVLGFEQENR  60
   61 YIVVDVCYPE APVGSIREQS NLLARQLLRT RRPFVASITD ALGNELFRVR RPFWWLTSSI 120
  121 YAEIDGEEIG VVHRRWHLWR RIYDLYLGNN QFAVVENPGF WNWTFTVKDA DGEVLAQIDR 180
  181 DWRGFGFEIF TDAGQYVIRF GKADAAAKTG PATLVEELEV KRPLTLSERA VVLTLAISLD 240
  241 NDYFSRHGGW GIPFMAVGE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.08
Match:	1zxuA
Description:	X-ray structure of protein from arabidopsis thaliana AT5G01750
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits