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View Structure Prediction Details

Protein: ARC6_ARATH
Organism: Arabidopsis thaliana
Length: 801 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for ARC6_ARATH.

Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEALSHVGIG LSPFQLCRLP PATTKLRRSH NTSTTICSAS KWADRLLSDF NFTSDSSSSS  60
   61 FATATTTATL VSPPPSIDRP ERHVP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [86-194]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPIDFYQVLG AQTHFLTDGI RRAFEARVSK PPQFGFSDDA LISRRQILQA ACETLSNPRS  60
   61 RREYNEGLLD DEEATVITDV PWDKVPGALC VLQEGGETEI VLRVGEALL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.39794
Match: 1xblA
Description: NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-76) IN THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 2-108) OF THE MOLECULAR CHAPERONE DNAJ, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [195-416]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KERLPKSFKQ DVVLVMALAF LDVSRDAMAL DPPDFITGYE FVEEALKLLQ EEGASSLAPD  60
   61 LRAQIDETLE EITPRYVLEL LGLPLGDDYA AKRLNGLSGV RNILWSVGGG GASALVGGLT 120
  121 REKFMNEAFL RMTAAEQVDL FVATPSNIPA ESFEVYEVAL ALVAQAFIGK KPHLLQDADK 180
  181 QFQQLQQAKV MAMEIPAMLY DTRNNWEIDF GLERGLCALL IG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.522879
Match: 1nltA
Description: The crystal structure of Hsp40 Ydj1
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [417-505]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVDECRMWLG LDSEDSQYRN PAIVEFVLEN SNRDDNDDLP GLCKLLETWL AGVVFPRFRD  60
   61 TKDKKFKLGD YYDDPMVLSY LERVEVVQG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [506-666]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPLAAAAAMA RIGAEHVKAS AMQALQKVFP SRYTDRNSAE PKDVQETVFS VDPVGNNVGR  60
   61 DGEPGVFIAE AVRPSENFET NDYAIRAGVS ESSVDETTVE MSVADMLKEA SVKILAAGVA 120
  121 IGLISLFSQK YFLKSSSSFQ RKDMVSSMES DVATIGSVRA D

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [667-801]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSEALPRMDA RTAENIVSKW QKIKSLAFGP DHRIEMLPEV LDGRMLKIWT DRAAETAQLG  60
   61 LVYDYTLLKL SVDSVTVSAD GTRALVEATL EESACLSDLV HPENNATDVR TYTTRYEVFW 120
  121 SKSGWKITEG SVLAS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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