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View Structure Prediction Details

Protein: gi|8777354, gi|2...
Organism: Arabidopsis thaliana
Length: 737 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|8777354, gi|2....

Description E-value Query
Range
Subject
Range
gi|7486226, gi|2... - pir||T08556 hypothetical protein F27B13.190 - Arabidopsis thaliana, gi|7269894|emb|CAB79753.1| puta...
280.0 [0..15] [638..2]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIHEETQIS TTQDPPCTSN DASPPQDHRF EKLRGVRWRI NLGILPSSPS STIDELRRVT  60
   61 ADSRRRYAAL RRRLLIDPHL PKKGTNSPDL TIDNPLSQNP DSTWGR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.4
Match: 2g77A
Description: No description for 2g77A was found.

Predicted Domain #2
Region A:
Residues: [107-465]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FFRNAELEKT LDQDLSRLYP EHGSYFQSSG CQGMLRRILL LWCLKHPEIG YRQGMHELLA  60
   61 PLLYVLQVDV QYLTEVRSNY EDQFVDLFDE LAFQERDSGA YDFDIKKVLD DSMEDEEEDG 120
  121 PPSGSTKKKK PKSFDELDTE TQTAVLLSDA YGGEGELGIV LSDKFMEHDA YTMFDALMYG 180
  181 GSSLGSVSVA NFFIYSAPND SITGLPPVIE ASGALYHLLS LVDASLHSHL VELGVEPQYF 240
  241 ALRWLRVLFG REFPLSNLLI VWDEIFSADN SEVERGVEAD LGCEFRILSS PRGALVAGMA 300
  301 VSMILYLRSS LLATENATSS LKKLLNFPED IDLSKVIEKA KTLQSLALEI NARRDLIPK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.39794
Match: 2qfzA
Description: No description for 2qfzA was found.

Predicted Domain #3
Region A:
Residues: [466-737]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPRKPMRGHS LSVDSISLGS SPVGIEPESY WEEKWRVLNS AEEEERRKKA LQRPKAGKKS  60
   61 WSERVKLRLS RTESDPSPAE AKRSGNKPHI RRSLLDDLSR QLGEKEIEPP EFPNPDTDIE 120
  121 RSSTVSDTPS AEYEDNSSDK GKSENHMDLP LSIPENEPEA KSGMNIFRER KILSGKFQRL 180
  181 WRLGRNLSGE ETSETKEAKQ VDSEDGKTDS DSTSGPGDSL KNTGRSMLEH IKVIESVLEL 240
  241 SSPENMTENG KLTVEEALRE LRRLGNMLLS EM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle