| Protein: | gi|26451129, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 607 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|26451129, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
707.0 | [0..15] | [607..15] |
|
|
661.0 | [0..7] | [605..53] |
|
|
660.0 | [0..20] | [605..2] |
|
|
659.0 | [0..36] | [605..1] |
|
|
659.0 | [0..36] | [605..1] |
|
|
653.0 | [0..32] | [605..20] |
|
|
652.0 | [0..36] | [605..1] |
|
|
640.0 | [0..36] | [605..1] |
|
Region A: Residues: [1-320] |
1 11 21 31 41 51
| | | | | |
1 MATSDSRSSP SSSDTEFADP NPSSDPETNS ERVQSQLESM NLSQPSEVSD GSHTEFSGGG 60
61 DDNDDEVASA NGNEGGVSNG GLLREGVAGT SGGEVLLRAE NPVEMEAGEE PPSPTSSGYD 120
121 GERGSSGGAT STYKADDGSE DEIREANVDG DTASQHEAAW LPGKRHVDED DASTSWRKRK 180
181 KHFFILSNSG KPIYSRYGDE HKLAGFSATL QAIISFVENG GDRVNLVKAG NHQVVFLVKG 240
241 PIYLVCISCT DETYEYLRGQ LDLLYGQMIL ILTKSIDRCF EKNAKFDMTP LLGGTDAVFS 300
301 SLVHSFSWNP ATFLHAYTCL
|
| Detection Method: |  |
| Confidence: | 11.045757 |
| Match: | 1mv3A |
| Description: | NMR STRUCTURE OF THE TUMOR SUPPRESSOR BIN1: ALTERNATIVE SPLICING IN MELANOMA AND INTERACTION WITH C-MYC |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [321-392] |
1 11 21 31 41 51
| | | | | |
1 PLPYALRQAT GTILQEVCAS GVLFSLLMCR HKVVSLAGAQ KASLHPDDLL LLSNFVMSSE 60
61 SFRTSESFSP IC
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.727 | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.727 | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.702 | d.52.9 | Description not found. |
| View | Download | 0.690 | d.52.8 | Description not found. |
| View | Download | 0.686 | d.101.1 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
| View | Download | 0.663 | d.52.8 | Description not found. |
| View | Download | 0.578 | d.10.1 | DNA-binding domain |
| View | Download | 0.562 | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.513 | d.9.2 | Description not found. |
| View | Download | 0.508 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [393-467] |
1 11 21 31 41 51
| | | | | |
1 LPRYNAQAFL HAYVHFFDDD TYVILLTTRS DAFHHLKDCR VRLEAVLLKS NILSVVQRSI 60
61 AEGGMRVEDV PIDRR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.588 | b.36.1 | PDZ domain-like |
| View | Download | 0.573 | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
| View | Download | 0.502 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.502 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.478 | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
| View | Download | 0.473 | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
| View | Download | 0.425 | d.58.24 | CheY-binding domain of CheA |
|
Region A: Residues: [468-607] |
1 11 21 31 41 51
| | | | | |
1 RRSSTTNQEQ DSPGPDISVG TGGPFGLWHF MYRSIYLDQY ISSEFSPPVT SHRQQKSLYR 60
61 AYQKLYASMH VKGLGPHKTQ YRRDENYTLL CWVTPDFELY AAFDPLADKA MAIKICNQVC 120
121 QRVKDVENEV FLQGASPFSW
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.838 | d.110.4 | SNARE-like |
| View | Download | 0.838 | d.110.4 | SNARE-like |
| View | Download | 0.781 | d.204.1 | Ribosome binding protein Y (YfiA homologue) |
| View | Download | 0.778 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.778 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.771 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.771 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.747 | b.60.1 | Lipocalins |
| View | Download | 0.735 | c.23.5 | Flavoproteins |
| View | Download | 0.728 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
