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View Structure Prediction Details

Protein: C3H23_ARATH
Organism: Arabidopsis thaliana
Length: 315 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C3H23_ARATH.

Description E-value Query
Range
Subject
Range
gi|21593538 - gi|21593538|gb|AAM65505.1| putative CCCH-type zinc finger protein [Arabidopsis thaliana]
246.0 [0..1] [315..1]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIGENKNRP HPTIHIPQWD QINDPTATIS SPFSSVNLNS VNDYPHSPSP YLDSFASLFR  60
   61 YLPSNELTND SDSSSGDESS PLTDSFSSDE FRIYEFKIRR CA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [103-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGRSHDWTEC PFAHPGEKAR RRDPRKFHYS GTACPEFRKG SCRRGDSCEF SHGVFECWLH  60
   61 PSRYRTQPCK DGTSCRRRIC FFAHTTEQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.522879
Match: 2d9nA
Description: No description for 2d9nA was found.

Predicted Domain #3
Region A:
Residues: [191-315]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRVLPCSLDP DLGFFSGLAT SPTSILVSPS FSPPSESPPL SPSTGELIAS MRKMQLNGGG  60
   61 CSWSSPMRSA VRLPFSSSLR PIQAATWPRI REFEIEEAPA MEFVESGKEL RAEMYARLSR 120
  121 ENSLG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle