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View Structure Prediction Details

Protein: RGLG2_ARATH
Organism: Arabidopsis thaliana
Length: 468 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGLG2_ARATH.

Description E-value Query
Range
Subject
Range
gi|30697566 - gi|30697566|ref|NP_849857.1| copine-related [Arabidopsis thaliana]
385.0 [0..22] [468..14]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ  60
   61 PPPPLYSTQP YSAPSY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.30103
Match: 2uzpA
Description: No description for 2uzpA was found.

Predicted Domain #2
Region A:
Residues: [77-359]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAPPSQSYGS DNKKRLERKY SKISDDYSSL EQVTEALARA GLESSNLIVG IDFTKSNEWT  60
   61 GARSFNRKSL HFIGSSPNPY EQAITIIGRT LAAFDEDNLI PCYGFGDAST HDQDVFSFNS 120
  121 EDRFCNGFEE VLSRYKEIVP QLKLAGPTSF APIIDMAMTI VEQSGGQYHV LVIIADGQVT 180
  181 RSVDTENGQL SPQEQKTVDA IVQASKLPLS IVLVGVGDGP WDMMREFDDN IPARAFDNFQ 240
  241 FVNFTEIMAK NKAQSLKETE FALSALMEIP QQYKATIELN LLG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.55
Match: 1q0pA
Description: A domain of Factor B
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [360-468]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRNGYIPERF PLPPPMRGGS SSYNSPKPSR LPSFKPSVPP HPTEGYHVRS SPVPPPTSSA  60
   61 SDNQLCPICL SNPKDMAFGC GHQTCCECGP DLQMCPICRA PIQTRIKLY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.69897
Match: 1fbvA
Description: Cbl; N-terminal domain of cbl (N-cbl); CBL
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.434026084000615 bayes_pls_golite062009
protein binding 0.31534665043077 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle