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View Structure Prediction Details

Protein: EF104_ARATH
Organism: Arabidopsis thaliana
Length: 241 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EF104_ARATH.

Description E-value Query
Range
Subject
Range
gi|21617964 - gi|21617964|gb|AAM67014.1| DNA binding protein-like protein [Arabidopsis thaliana]
239.0 [0..1] [241..1]
gi|41351817 - gi|41351817|gb|AAS00621.1| DREB1 [Thellungiella salsuginea]
197.0 [0..30] [239..2]
gi|71983373 - gi|71983373|gb|AAZ57434.1| CRT/DRE binding factor 1 [Iris lactea var. chinensis]
194.0 [0..30] [239..2]
gi|5616086 - gi|5616086|gb|AAD45623.1|AF084185_1 dehydration responsive element binding protein [Brassica napus]
192.0 [0..38] [239..1]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKQEALAI DFISQHLLTD FVSMETDHPS LFTNQLHNFH SETGPRTITN QSPKPNSTLN  60
   61 QRKPPLPNLS VSRTVST

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [78-148]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTEKEEEERH YRGVRRRPWG KYAAEIRDPN KKGCRIWLGT YDTAVEAGRA YDQAAFQLRG  60
   61 RKAILNFPLD V

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.69897
Match: 1gccA
Description: GCC-box binding domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [149-241]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVTSETCSGE GVIGLGKRKR DKGSPPEEEK AARVKVEEEE SNTSETTEAE VEPVVPLTPS  60
   61 SWMGFWDVGA GDGIFSIPPL SPTSPNFSVI SVT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle