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View Structure Prediction Details

Protein: gi|25410933, gi|...
Organism: Arabidopsis thaliana
Length: 275 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25410933, gi|....

Description E-value Query
Range
Subject
Range
gi|109638227 - gi|109638227|dbj|BAE96738.1| S receptor kinase [Brassica rapa]
361.0 [0..3] [274..23]

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Predicted Domain #1
Region A:
Residues: [1-107]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPVRGCNDR DIKFSPKFVV YALRVSLFET VSGKKGIGLY DSSKASHWLG ESSEPFNSFG  60
   61 TFKFSNNNLV LDDQAGIRVW GTNFMGVVGS SLVKEFLDDG NFVIKNT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.69897
Match: 1bwuQ
Description: Lectin (agglutinin)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [108-275]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WDNDTAGFLW QSFDFLTDTL LPGMALGWKF HRGINRYLLP FPDGYLLPKM ALGWNFHWGV  60
   61 NQYLVAWETP DNPSKSREEY VASSFPELFV SNYEGRLYGT GPLDDQKEQS LMDKTFLSDK 120
  121 IYIADIQEVS FTAYNDSIFT RLNLSPPGIL QRLTWNQTVE RWIGSWHQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.47
Match: 1dlpA
Description: Fetuin-binding protein Scafet precursor
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle