| Protein: | C3H4_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 481 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C3H4_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
376.0 | [0..1] | [481..1] |
|
Region A: Residues: [1-90] |
1 11 21 31 41 51
| | | | | |
1 MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR 60
61 DARYKKTEIC QTCCKLKNVC QVCLLDLEYG
|
| Detection Method: |  |
| Confidence: | 0.953 |
| Match: | 1m1pA |
| Description: | Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.30364058205025 | bayes_pls_golite062009 |
| catalytic activity | 0.223774911842048 | bayes_pls_golite062009 |
|
Region A: Residues: [91-319] |
1 11 21 31 41 51
| | | | | |
1 LPVQVRDTAL NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR 60
61 TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG VNDPVAMKLL 120
121 GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY 180
181 TSREGAEKAA QELSNRLVIN GQRLKLTWGR PKPDQDGANQ QGGVAHSGL
|
| Detection Method: | |
| Confidence: | 32.09691 |
| Match: | 1l3kA |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| snRNA binding | 3.28448936696877 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| binding | 3.05116833253954 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.26303528058407 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| protein binding | 0.42571879933058 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
|
Region A: Residues: [320-481] |
1 11 21 31 41 51
| | | | | |
1 LPRAVISQQH NQPPPMQQYY MHPPPANQDK PYYPSMDPQR MGAVISTQEA GGSSTENNGA 60
61 SSSSYMMPPH QSYPPPPYGY MPSPYQQQYP PNHHHQPSPM QHYAPPPAAY PYPQQPGPGS 120
121 RPAPSPTAVS AISPDSAPAG SGAPSGSSQQ APDVSTATGS SQ
|
| Detection Method: | |
| Confidence: | 6.39794 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
