YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: GTE4_ARATH
Organism: Arabidopsis thaliana
Length: 766 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GTE4_ARATH.

Description E-value Query
Range
Subject
Range
gi|50755982 - gi|50755982|ref|XP_414964.1| PREDICTED: similar to CREB-binding protein [Gallus gallus]
252.0 [0..80] [749..996]

Back

Predicted Domain #1
Region A:
Residues: [1-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV  60
   61 SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP SENLPGDDSD KVIDKPLVEA 120
  121 FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD 180
  181 KNPIEAPSQT LSLEDGDTLV VDKNPIEV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [209-417]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSEEDVHVID ADNLIKEAHP ENFVERDTTD AQQPAGLTSD SAHATAAGSM PMEEDADGRI  60
   61 RIHVASTTKQ QKEEIRKKLE DQLNVVRGMV KKIEDKEGEI GAYNDSRVLI NTGINNGGGR 120
  121 ILSGFASAGL PREVIRAPRP VNQLSISVLE NTQGVNEHVE KEKRTPKANQ FYRNSEFLLG 180
  181 DKLPPAESNK KSKSSSKKQG GDVGHGFGA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [418-577]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTKVFKNCSA LLERLMKHKH GWVFNAPVDV KGLGLLDYYT IIEHPMDLGT IKSALMKNLY  60
   61 KSPREFAEDV RLTFHNAMTY NPEGQDVHLM AVTLLQIFEE RWAVIEADYN REMRFVTGYE 120
  121 MNLPTPTMRS RLGPTMPPPP INVRNTIDRA DWSNRQPTTT 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.69897
Match: 2dvvA
Description: No description for 2dvvA was found.

Predicted Domain #4
Region A:
Residues: [578-766]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGRTPTSATP SGRTPALKKP KANEPNKRDM TYEEKQKLSG HLQNLPPDKL DAIVQIVNKR  60
   61 NTAVKLRDEE IEVDIDSVDP ETLWELDRFV TNYKKGLSKK KRKAELAIQA RAEAERNSQQ 120
  121 QMAPAPAAHE FSREGGNTAK KTLPTPLPSQ VEKQNNETSR SSSSSSSSSS SSSSDSDSDS 180
  181 SSSSGSDQT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle