YRC Public Data Repository - Protein Structure Prediction

Protein:	TAF9_ARATH
Organism:	Arabidopsis thaliana
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAF9_ARATH.

Description	E-value	Query Range	Subject Range
gi\|77416927 - gi\|77416927\|gb\|ABA81859.1\| unknown [Solanum tuberosum]	223.0	[0..1]	[178..1]
TAF9_BOVIN - Transcription initiation factor TFIID subunit 9 OS=Bos taurus GN=TAF9 PE=2 SV=1	216.0	[0..4]	[134..7]
gi\|13097291 - gi\|13097291\|gb\|AAH03400.1\| TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor,...	213.0	[0..4]	[135..7]
gi\|61358711 - gi\|61358711\|gb\|AAX41611.1\| TAF9 RNA polymerase II TATA box binding protein (TBP)-associated factor [...	213.0	[0..4]	[135..7]
gi\|73949703, gi\|... - gi\|73949705\|ref\|XP_861924.1\| PREDICTED: similar to Transcription initiation factor TFIID subunit 9 (...	213.0	[0..4]	[135..7]
gi\|112419415, gi... - gi\|182891744\|gb\|AAI65107.1\| Taf9 protein [Danio rerio], gi\|113205047\|ref\|NP_001037860.1\| TAF9 RNA po...	212.0	[0..4]	[135..2]
gi\|94371608, gi\|... - gi\|94371669\|ref\|XP_620010.3\| PREDICTED: similar to RNA polymerase II TATA box binding protein-associ...	212.0	[0..4]	[134..49]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGEGEEDVP RDAKIVKSLL KSMGVEDYEP RVIHQFLELW YRYVVEVLTD AQVYSEHASK  60
   61 PNIDCDDVKL AIQSKVNFSF S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.221849
Match:	1tafA
Description:	TAF(II)42
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [82-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPPPREVLLE LAASRNKIPL PKSIAGPGVP LPPEQDTLLS PNYQLVIPKK SVSTEPEETE  60
   61 DDEEMTDPGQ SSQEQQQQQQ QTSDLPSQTP QRVSFPLSRR PK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits