YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42568687, gi\|...
Organism:	Arabidopsis thaliana
Length:	436 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42568687, gi|....

Description	E-value	Query Range	Subject Range
gi\|109114697 - gi\|109114697\|ref\|XP_001109240.1\| PREDICTED: apoptosis antagonizing transcription factor [Macaca mula...	420.0	[0..1]	[436..261]
gi\|73966710 - gi\|73966710\|ref\|XP_537715.2\| PREDICTED: similar to Protein AATF (Apoptosis-antagonizing transcriptio...	416.0	[0..1]	[434..51]
AATF - apoptosis antagonizing transcription factor gi\|168279097, gi... - gi\|168279097\|dbj\|BAG11428.1\| apoptosis antagonizing transcription factor [synthetic construct], gi\|1...	409.0	[0..1]	[436..53]
gi\|114667928 - gi\|114667928\|ref\|XP_511427.2\| PREDICTED: apoptosis antagonizing transcription factor [Pan troglodyte...	408.0	[0..1]	[436..53]
gi\|74194197 - gi\|74194197\|dbj\|BAE24653.1\| unnamed protein product [Mus musculus]	399.0	[0..1]	[436..52]
AATF_RAT - Protein AATF OS=Rattus norvegicus GN=Aatf PE=1 SV=1	386.0	[0..1]	[436..52]
AATF_CHICK - Protein AATF OS=Gallus gallus GN=AATF PE=2 SV=1	362.0	[0..1]	[436..49]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGSKRSKR ARLDSESEDI SDQENLKAES DNEDDQLPDG IEDDEVDSME DDEGESEEDD  60
   61 EGDTEEDDEG DSEEDDEGEN KEDEDGESED FEDGNDKESE SGDEGNDDNK DAQMEELEKE 120
  121 VKELRSQEQD ILKNLKRDKG EDAVKGQAVK NQKALWDKIL EFRFLLQKAF DRSNRLPQEP 180
  181 VKSLFCSE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [189-350]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEDVSTAYTD LVTSSKKTLD SLLELQEALF EKNPSVDQQV NATASEESNK SDAEDSDEWQ  60
   61 RISDLQKRMS VFRNKAVDKW QRKTQVTTGA AAIKGKLHAF NQNVSEQVAS YMRDPSRMIK 120
  121 QMQQSRSTVA VFGTVPQEAM EPNPEEKQEE GDPELVEDAE FY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [351-436]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQLLKEFLET IDPASSEAAF YEMKKFQTKK RKVVDRRASK SRKIRYNVHE KIVNFMAPRP  60
   61 AKIPPNTADL LKNLFGLKTR NVQSEA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	38.958607
Match:	PF08164.3
Description:	No description for PF08164.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.885	N/A	N/A	d.51.1	Eukaryotic type KH-domain (KH-domain type I)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits