YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34365625, gi\|...
Organism:	Arabidopsis thaliana
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34365625, gi|....

Description	E-value	Query Range	Subject Range
gi\|7442218, gi\|3... - pir\|\|T10223 hypothetical protein T11I11.10 - Arabidopsis thaliana, gi\|7270428\|emb\|CAB80194.1\| putati...	137.0	[0..1]	[97..1]
gi\|7488613, gi\|2... - pir\|\|T17020 auxin-induced protein - apple tree, gi\|2924327\|emb\|CAB07785.1\| hypothetical protein [Mal...	135.0	[0..1]	[94..1]
ARG7_VIGRR - Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1 gi\|7442222, gi\|2... - pir\|\|T10942 auxin-induced protein 6B - mung bean, gi\|287570\|dbj\|BAA03310.1\| ORF [Vigna radiata]	133.0	[0..1]	[94..1]
gi\|217075552, gi... - gi\|92870685\|gb\|ABE79956.1\| Auxin responsive SAUR protein [Medicago truncatula], gi\|217075552\|gb\|ACJ8...	129.0	[0..5]	[95..17]
AX10A_SOYBN - Auxin-induced protein X10A OS=Glycine max PE=2 SV=1	128.0	[0..1]	[95..1]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIRISRVLQ SSKQLLKSLS HSSNNVAIPK GHLAVYVGEM MQKRRFVVPV TYLSHPCFQK  60
   61 LLRKAEEEFG FDHPMGGLTI PCTEQIFIDL ASRLSTSS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	41.886057
Match:	PF02519.5
Description:	No description for PF02519.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits