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View Structure Prediction Details

Protein: gi|2739374, gi|5...
Organism: Arabidopsis thaliana
Length: 465 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2739374, gi|5....

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
463.0 [0..5] [464..1181]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=...
gi|25530855 - pir||AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)
459.0 [0..1] [464..955]
gi|75701503, gi|... - gi|75907778|ref|YP_322074.1| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...
455.0 [0..5] [464..1095]
gi|37523925, gi|... - gi|37523925|ref|NP_927302.1| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi|35214...
446.0 [0..2] [464..616]
gi|48893630, gi|... - gi|71673807|ref|ZP_00671555.1| TPR repeat:G-protein beta WD-40 repeat:YD repeat [Trichodesmium eryth...
443.0 [0..1] [464..1039]

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Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM  60
   61 MMSPWNQATP FTQTQWSTVE ENLP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [85-465]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNGLIGSLVR EEGHIYSLAA TKDLLYTGSD SKNIRVWKNL KEFSAFKCNS GLVKAIVISG  60
   61 EKIFTGHQDG KIRVWKVSPK NQSLHKRSGT LPTLKDIFKA SLKPRNYVEV KKHRTALWIK 120
  121 HADAVSCLSL NDEQGLLYSA SWDRTIKVWR IADSKCLESI PAHDDAVNSV VSTTEAIVFS 180
  181 GSADGTVKAW KRDQQGKYTK HTLMQTLTKQ ESAVTALAVS KNGAAVYFGS SDGLVNFWER 240
  241 EKQLNYGGIL KGHKLAVLCL EVAGSLVFSG SADKTICVWK RDGNIHTCLS VLTGHTGPVK 300
  301 CLAVEADREA SERRDKKWIV YSGSLDKSVK VWGVSESFID MNQMSMMQQQ QQQHVISHSE 360
  361 PFMSDGSFSS SAGGASSHRR H

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.0
Match: 2ovpB
Description: No description for 2ovpB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle