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View Structure Prediction Details

Protein: AMT15_ARATH
Organism: Arabidopsis thaliana
Length: 496 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMT15_ARATH.

Description E-value Query
Range
Subject
Range
gi|116056286 - gi|116056286|emb|CAL56669.1| ammonium transporter (ISS) [Ostreococcus tauri]
435.0 [0..34] [473..725]

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Predicted Domain #1
Region A:
Residues: [1-496]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGAITCSAA DLSALLGPNA TAAADYICGQ LGSVNNKFTD AAYAIDNTYL LFSAYLVFAM  60
   61 QLGFAMLCAG SVRAKNTMNI MLTNVLDAAA GGLFYYLFGY AFAFGESSDG FIGRHNFGLQ 120
  121 NFPTLTSDYS FFLYQWAFAI AAAGITSGSI AERTKFVAYL IYSSFLTGFV YPVVSHWFWS 180
  181 PDGWASPFRS EDRLFGTGAI DFAGSGVVHM VGGIAGLWGA LIEGPRIGRF PDGGHAIALR 240
  241 GHSASLVVLG TFLLWFGWYG FNPGSFTKIL IPYNSGSNYG QWSGIGRTAV TTTLSGCTAA 300
  301 LTTLFGKRLL SGHWNVTDVC NGLLGGFAAI TAGCSVVDPW AAIVCGFVAS LVLIGCNKLA 360
  361 ELLKYDDPLE AAQLHGGCGA WGLIFVGLFA KEKYINEVYG ASPGRHYGLF MGGGGKLLGA 420
  421 QLVQIIVIVG WVSATMGTLF FILKKLNLLR ISEQHEMRGM DLAGHGGFAY IYHDNDDDSI 480
  481 GVPGSPVPRA PNPPAV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.69897
Match: 1xqeA
Description: The mechanism of ammonia transport based on the crystal structure of AmtB of E. coli.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ammonium transmembrane transporter activity 10.0624820335928 bayes_pls_golite062009
organic cation transmembrane transporter activity 9.07420898067257 bayes_pls_golite062009
cation transmembrane transporter activity 7.57181833547312 bayes_pls_golite062009
ion transmembrane transporter activity 7.46308808953548 bayes_pls_golite062009
methylammonium transmembrane transporter activity 7.38326654060024 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 7.08971867997216 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 7.03159982829686 bayes_pls_golite062009
transporter activity 5.3870893301235 bayes_pls_golite062009
transmembrane transporter activity 5.3046132351753 bayes_pls_golite062009
substrate-specific transporter activity 5.16067985999244 bayes_pls_golite062009
high affinity secondary active ammonium transmembrane transporter activity 3.56825523857899 bayes_pls_golite062009
amine transmembrane transporter activity 2.81164277777293 bayes_pls_golite062009
active transmembrane transporter activity 1.08017669832334 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle