YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SGAT_ARATH
Organism: Arabidopsis thaliana
Length: 401 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SGAT_ARATH.

Description E-value Query
Range
Subject
Range
gi|92877145 - gi|92877145|gb|ABE84344.1| Aminotransferase, class V [Medicago truncatula]
298.0 [0..1] [401..1]

Back

Predicted Domain #1
Region A:
Residues: [1-401]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYMYGPGRH HLFVPGPVNI PEPVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG  60
   61 TPFLFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI DQQKRLNFNV DVVESDWGQG 120
  121 ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI 180
  181 CALDFRMDEW GVDVALTGSQ KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF 240
  241 YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK 300
  301 EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL 360
  361 GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.69897
Match: 1vjoA
Description: Crystal structure of Alanine--glyoxylate aminotransferase (ALR1004) from Nostoc sp. at 1.70 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
alanine-glyoxylate transaminase activity 5.09067995370888 bayes_pls_golite062009
serine-pyruvate transaminase activity 3.41330924856745 bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity 3.04830539911875 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 3.04830539911875 bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity 2.30133284041702 bayes_pls_golite062009
catalytic activity 2.29878871754893 bayes_pls_golite062009
O-phospho-L-serine:2-oxoglutarate aminotransferase activity 2.1692959843619 bayes_pls_golite062009
transferase activity, transferring nitrogenous groups 1.28316822767388 bayes_pls_golite062009
transaminase activity 1.24990480711889 bayes_pls_golite062009
transferase activity, transferring acyl groups 1.19150094103499 bayes_pls_golite062009
4-aminobutyrate transaminase activity 1.1251558546682 bayes_pls_golite062009
transferase activity 0.737426388870721 bayes_pls_golite062009
binding 0.513318446274735 bayes_pls_golite062009
L-allo-threonine aldolase activity 0.500744432308415 bayes_pls_golite062009
glycine hydroxymethyltransferase activity 0.271623203801431 bayes_pls_golite062009
methyltransferase activity 0.093175965161657 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.0150995688991599 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle