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View Structure Prediction Details

Protein: NRX1_ARATH
Organism: Arabidopsis thaliana
Length: 578 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRX1_ARATH.

Description E-value Query
Range
Subject
Range
gi|21592996 - gi|21592996|gb|AAM64945.1| PDI-like protein [Arabidopsis thaliana]
352.0 [0..1] [578..1]

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Predicted Domain #1
Region A:
Residues: [1-152]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAETSKQVNG DDAQDLHSLL SSPARDFLVR NDGEQVKVDS LLGKKIGLYF SAAWCGPCQR  60
   61 FTPQLVEVYN ELSSKVGFEI VFVSGDEDEE SFGDYFRKMP WLAVPFTDSE TRDRLDELFK 120
  121 VRGIPNLVMV DDHGKLVNEN GVGVIRSYGA DA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.30103
Match: 1o73A
Description: Tryparedoxin I
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [153-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPFTPEKMKE IKEDEDRARR GQTLRSVLVT PSRDFVISPD GNKVPVSELE GKTIGLLFSV  60
   61 ASYRKCTELT PKLVEFYTKL KENKEDFEIV LISLEDDEES FNQDFKTKPW LALPFNDKSG 120
  121 SKLARHFMLS TLPTLVILGP DGKTRHSNVA EAIDDYGV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.0
Match: 2h30A
Description: No description for 2h30A was found.

Predicted Domain #3
Region A:
Residues: [311-460]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAYPFTPEKF QELKELEKAK VEAQTLESLL VSGDLNYVLG KDGAKVLVSD LVGKTILMYF  60
   61 SAHWCPPCRA FTPKLVEVYK QIKERNEAFE LIFISSDRDQ ESFDEYYSQM PWLALPFGDP 120
  121 RKASLAKTFK VGGIPMLAAL GPTGQTVTKE 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 5.86
Match: 2h30A
Description: No description for 2h30A was found.

Predicted Domain #4
Region A:
Residues: [461-578]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARDLVVAHGA DAYPFTEERL KEIEAKYDEI AKDWPKKVKH VLHEEHELEL TRVQVYTCDK  60
   61 CEEEGTIWSY HCDECDFDLH AKCALNEDTK ENGDEAVKVG GDESKDGWVC EGNVCTKA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.39794
Match: 1v5nA
Description: Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.45315387764182 bayes_pls_golite062009
protein binding 1.05836277014272 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle