YRC Public Data Repository - Protein Structure Prediction

Protein:	HBPL1_ARATH
Organism:	Arabidopsis thaliana
Length:	309 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HBPL1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|20466560 - gi\|20466560\|gb\|AAM20597.1\| unknown protein [Arabidopsis thaliana]	352.0	[0..20]	[309..20]
gi\|92867677 - gi\|92867677\|gb\|ABE77860.1\| SOUL heme-binding protein; Bacterial regulatory factor, effector [Medicag...	324.0	[0..23]	[307..3]
gi\|76626135 - gi\|76626135\|ref\|XP_586137.2\| PREDICTED: similar to heme binding protein 2 [Bos taurus]	274.0	[0..28]	[308..131]
gi\|115446499, gi... - gi\|50253033\|dbj\|BAD29282.1\| SOUL heme-binding protein-like [Oryza sativa Japonica Group], gi\|5025140...	246.0	[0..81]	[306..57]
gi\|90337714, gi\|... - gi\|90418042\|ref\|ZP_01225954.1\| conserved hypothetical protein [Aurantimonas sp. SI85-9A1], gi\|903377... gi\|90337714, gi\|... - gi\|90418042\|ref\|ZP_01225954.1\| conserved hypothetical protein [Aurantimonas sp. SI85-9A1], gi\|903377...	224.0	[0..41]	[304..126]
gi\|71543907, gi\|... - gi\|71543907\|ref\|ZP_00664975.1\| SOUL heme-binding protein [Syntrophobacter fumaroxidans MPOB], gi\|714...	222.0	[0..91]	[307..8]
gi\|106880797, gi... - gi\|119945484\|ref\|YP_943164.1\| SOUL heme-binding protein [Psychromonas ingrahamii 37], gi\|119864088\|g...	218.0	[0..107]	[308..17]
gi\|114538281, gi... - gi\|114706420\|ref\|ZP_01439322.1\| hypothetical protein FP2506_01510 [Fulvimarina pelagi HTCC2506], gi\|...	217.0	[0..40]	[306..115]
gi\|67938490, gi\|... - gi\|67938490\|ref\|ZP_00531015.1\| SOUL heme-binding protein [Chlorobium phaeobacteroides BS1], gi\|67915...	214.0	[0..112]	[304..22]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMISSSSIT SSLSLLSSSP EKLPLINPIQ RCPITYSGFR TASVNRAIRR QPQSPAVSAT  60
   61 ESRVSLVLAL ASQASSVSQR LLADLAMETA KYVFPKRFDS STNLEEAFMS V

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [112-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDLETMNFRV LFRTDKYEIR QVEPYFVAET IMPGETGFDS YGASKSFNVL AEYLFGKNTI  60
   61 KEKMEMTTPV VTRKVQSVGE KMEMTTPVIT SKAKDQNQWR MSFVMPSKYG SNLPLPKDPS 120
  121 VKIQQVPRKI VAVVAFSGYV TDEEIERRER ELRRALQNDK KFRVRDGVSF EVAQYNPPFT 180
  181 LPFMRRNEVS LEVENKED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.30103
Match:	2hvaA
Description:	No description for 2hvaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits