YRC Public Data Repository - Protein Structure Prediction

Protein:	HBPL1_ARATH
Organism:	Arabidopsis thaliana
Length:	309 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HBPL1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|20466560 - gi\|20466560\|gb\|AAM20597.1\| unknown protein [Arabidopsis thaliana]	352.0	[0..20]	[309..20]
gi\|92867677 - gi\|92867677\|gb\|ABE77860.1\| SOUL heme-binding protein; Bacterial regulatory factor, effector [Medicag...	324.0	[0..23]	[307..3]
gi\|76626135 - gi\|76626135\|ref\|XP_586137.2\| PREDICTED: similar to heme binding protein 2 [Bos taurus]	274.0	[0..28]	[308..131]
gi\|115446499, gi... - gi\|50253033\|dbj\|BAD29282.1\| SOUL heme-binding protein-like [Oryza sativa Japonica Group], gi\|5025140...	246.0	[0..81]	[306..57]
gi\|90337714, gi\|... - gi\|90418042\|ref\|ZP_01225954.1\| conserved hypothetical protein [Aurantimonas sp. SI85-9A1], gi\|903377... gi\|90337714, gi\|... - gi\|90418042\|ref\|ZP_01225954.1\| conserved hypothetical protein [Aurantimonas sp. SI85-9A1], gi\|903377...	224.0	[0..41]	[304..126]
gi\|71543907, gi\|... - gi\|71543907\|ref\|ZP_00664975.1\| SOUL heme-binding protein [Syntrophobacter fumaroxidans MPOB], gi\|714...	222.0	[0..91]	[307..8]
gi\|106880797, gi... - gi\|119945484\|ref\|YP_943164.1\| SOUL heme-binding protein [Psychromonas ingrahamii 37], gi\|119864088\|g...	218.0	[0..107]	[308..17]
gi\|114538281, gi... - gi\|114706420\|ref\|ZP_01439322.1\| hypothetical protein FP2506_01510 [Fulvimarina pelagi HTCC2506], gi\|...	217.0	[0..40]	[306..115]
gi\|67938490, gi\|... - gi\|67938490\|ref\|ZP_00531015.1\| SOUL heme-binding protein [Chlorobium phaeobacteroides BS1], gi\|67915...	214.0	[0..112]	[304..22]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMISSSSIT SSLSLLSSSP EKLPLINPIQ RCPITYSGFR TASVNRAIRR QPQSPAVSAT  60
   61 ESRVSLVLAL ASQASSVSQR LLADLAMETA KYVFPKRFDS STNLEEAFMS V

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.779	a.8.4	Description not found.
View	Download	0.637	a.71.1	Endoplasmic reticulum protein ERP29, C-domain
View	Download	0.619	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.609	a.48.3	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
View	Download	0.600	a.8.4	Description not found.
View	Download	0.560	a.1.1	Globin-like
View	Download	0.548	a.24.7	FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
View	Download	0.524	a.8.3	Families 57/38 glycoside transferase middle domain
View	Download	0.490	a.23.4	Mitochondrial import receptor subunit Tom20
View	Download	0.489	a.118.1	ARM repeat

Predicted Domain #2

Region A:
Residues: [112-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDLETMNFRV LFRTDKYEIR QVEPYFVAET IMPGETGFDS YGASKSFNVL AEYLFGKNTI  60
   61 KEKMEMTTPV VTRKVQSVGE KMEMTTPVIT SKAKDQNQWR MSFVMPSKYG SNLPLPKDPS 120
  121 VKIQQVPRKI VAVVAFSGYV TDEEIERRER ELRRALQNDK KFRVRDGVSF EVAQYNPPFT 180
  181 LPFMRRNEVS LEVENKED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.30103
Match:	2hvaA
Description:	No description for 2hvaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits