| Protein: | gi|25406152, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 977 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25406152, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
609.0 | [0..20] | [977..20] |
|
Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MSRRPDLLRG SVVATVAATF LLFIFPPNVE STVEKQALFR FKNRLDDSHN ILQSWKPSDS 60
61 PCVFRGITCD PLSGEVIGIS LGNVNLSGTI SPSISALTKL STLSLPSNFI SGRIPPEIVN 120
121 CKNLKVLNLT SNRLSGTIPN LS
|
| Detection Method: |  |
| Confidence: | 3.7 |
| Match: | 1ogqA |
| Description: | Polygalacturonase inhibiting protein PGIP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| signal transducer activity | 2.4085292238246 | bayes_pls_golite062009 |
| molecular transducer activity | 2.4085292238246 | bayes_pls_golite062009 |
| receptor activity | 2.2404190515424 | bayes_pls_golite062009 |
| transmembrane receptor activity | 2.05390057743708 | bayes_pls_golite062009 |
| binding | 1.88645638630371 | bayes_pls_golite062009 |
| protein kinase activity | 1.44543786404772 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 1.18001333603647 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.14774707593524 | bayes_pls_golite062009 |
| kinase activity | 1.13356668527648 | bayes_pls_golite062009 |
| receptor binding | 0.840949032260867 | bayes_pls_golite062009 |
| G-protein coupled receptor activity | 0.813157169054229 | bayes_pls_golite062009 |
| protein binding | 0.629660151009639 | bayes_pls_golite062009 |
| glycosaminoglycan binding | 0.447613578619564 | bayes_pls_golite062009 |
| nucleic acid binding | 0.395267677392511 | bayes_pls_golite062009 |
| protein tyrosine kinase activity | 0.176363297428464 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.143284785584541 | bayes_pls_golite062009 |
|
Region A: Residues: [143-289] |
1 11 21 31 41 51
| | | | | |
1 PLKSLEILDI SGNFLNGEFQ SWIGNMNQLV SLGLGNNHYE EGIIPESIGG LKKLTWLFLA 60
61 RSNLTGKIPN SIFDLNALDT FDIANNAISD DFPILISRLV NLTKIELFNN SLTGKIPPEI 120
121 KNLTRLREFD ISSNQLSGVL PEELGVL
|
| Detection Method: | |
| Confidence: | 11.522879 |
| Match: | 1xeuA |
| Description: | Crystal Structure of Internalin C from Listeria monocytogenes |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [290-593] |
1 11 21 31 41 51
| | | | | |
1 KELRVFHCHE NNFTGEFPSG FGDLSHLTSL SIYRNNFSGE FPVNIGRFSP LDTVDISENE 60
61 FTGPFPRFLC QNKKLQFLLA LQNEFSGEIP RSYGECKSLL RLRINNNRLS GQVVEGFWSL 120
121 PLAKMIDLSD NELTGEVSPQ IGLSTELSQL ILQNNRFSGK IPRELGRLTN IERIYLSNNN 180
181 LSGEIPMEVG DLKELSSLHL ENNSLTGFIP KELKNCVKLV DLNLAKNFLT GEIPNSLSQI 240
241 ASLNSLDFSG NRLTGEIPAS LVKLKLSFID LSGNQLSGRI PPDLLAVGGS TAFSRNEKLC 300
301 VDKE
|
| Detection Method: | |
| Confidence: | 6.7 |
| Match: | 1ogqA |
| Description: | Polygalacturonase inhibiting protein PGIP |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| signal transducer activity | 2.4085292238246 | bayes_pls_golite062009 |
| molecular transducer activity | 2.4085292238246 | bayes_pls_golite062009 |
| receptor activity | 2.2404190515424 | bayes_pls_golite062009 |
| transmembrane receptor activity | 2.05390057743708 | bayes_pls_golite062009 |
| binding | 1.88645638630371 | bayes_pls_golite062009 |
| protein kinase activity | 1.44543786404772 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 1.18001333603647 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.14774707593524 | bayes_pls_golite062009 |
| kinase activity | 1.13356668527648 | bayes_pls_golite062009 |
| receptor binding | 0.840949032260867 | bayes_pls_golite062009 |
| G-protein coupled receptor activity | 0.813157169054229 | bayes_pls_golite062009 |
| protein binding | 0.629660151009639 | bayes_pls_golite062009 |
| glycosaminoglycan binding | 0.447613578619564 | bayes_pls_golite062009 |
| nucleic acid binding | 0.395267677392511 | bayes_pls_golite062009 |
| protein tyrosine kinase activity | 0.176363297428464 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.143284785584541 | bayes_pls_golite062009 |
|
Region A: Residues: [594-662] |
1 11 21 31 41 51
| | | | | |
1 NAKTNQNLGL SICSGYQNVK RNSSLDGTLL FLALAIVVVV LVSGLFALRY RVVKIRELDS 60
61 ENRDINKAD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [663-977] |
1 11 21 31 41 51
| | | | | |
1 AKWKIASFHQ MELDVDEICR LDEDHVIGSG SAGKVYRVDL KKGGGTVAVK WLKRGGGEEG 60
61 DGTEVSVAEM EILGKIRHRN VLKLYACLVG RGSRYLVFEF MENGNLYQAL GNNIKGGLPE 120
121 LDWLKRYKIA VGAAKGIAYL HHDCCPPIIH RDIKSSNILL DGDYESKIAD FGVAKVADKG 180
181 YEWSCVAGTH GYMAPELAYS FKATEKSDVY SFGVVLLELV TGLRPMEDEF GEGKDIVDYV 240
241 YSQIQQDPRN LQNVLDKQVL STYIEESMIR VLKMGLLCTT KLPNLRPSMR EVVRKLDDAD 300
301 PCVSNSQDTT GKITV
|
| Detection Method: | |
| Confidence: | 67.045757 |
| Match: | 2qkwB |
| Description: | No description for 2qkwB was found. |
