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View Structure Prediction Details

Protein: gi|18412636, gi|...
Organism: Arabidopsis thaliana
Length: 332 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18412636, gi|....

Description E-value Query
Range
Subject
Range
gi|255670064, gi... - gi|255670064|dbj|BAF29216.2| Os12g0156200 [Oryza sativa Japonica Group], gi|108862221|gb|ABA96496.2|...
189.0 [0..1] [328..1042]

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Predicted Domain #1
Region A:
Residues: [1-223]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCKLRVVARP FIVCEVGSGV TAKFWHDNWI GLGPLIEVIG PLGPRTVGLP IDAVVRDALR  60
   61 GTSWWIASSR SRNPIIVQLK NLLPEAQGLL DCQHDDSFLW KTDLHAPSNR FSAPRTWSAL 120
  121 HPQSHTVPWH KAVWFKNHVP KHAFICWVVA WNRLHTRDRL QNWGLSIPAE CLLCNAHDDS 180
  181 RAHLFFECQF SGVVWRFFTA STNLNPPAQL MDCLNWLLSP SRE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.81
Match: 1e1hB
Description: Crystal Structure of recombinant Botulinum Neurotoxin Type A Light Chain, self-inhibiting Zn endopeptidase.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [224-332]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNICLIIRLA FHSCVYAIWR ERNQRLHSGV SRSTESILKD IQLIIRARLD PLSRSTAHQP  60
   61 NALSLLGTCE PEITVYKAPE IEVKLDNFNE KTDIYSFGIV FLSLALFWI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle