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Protein Overview: gi|255670064, gi...

General Information:
Name(s) found: gi|255670064 [NCBI NR]
gi|108862221 [NCBI NR]
Description(s) found:
Found 3 descriptions.
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  • gi|255670064|dbj|BAF29216.2| Os12g0156200 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|108862221|gb|ABA96496.2| retrotransposon protein, putative, unclassified, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 1764 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRDMNDQPT RVDAFDGFDI REGKGEDSID SQLADQTNML HVSEVASLGQ KKGKDLVSKE  60
   61 TSSIPSMEMI PAIRDLNVQQ VSFGDGSTEE FGSPTKRKAL PTTKSSGIVQ QAVLEYGQRG 120
  121 AEETASSTRA MKRLKKGVEA NTGVEDMEAT SLGAAGKLAG PMRGQSVEKM SRLRGRLGLR 180
  181 GFTGVSSEGM SGGLALYWDE SVSVDVKDIN KRYIDAYVQL SPEEPQWHVT FVYGEPRVEN 240
  241 RHRMWSLLRT IHQSSSLPWA VIGDFNETMW QFEHFSRTPR GEPQMQDFRD VLQDCELHDL 300
  301 GFKGVPHTYD NKREGWRNVK VRLDRVVADD KWRDIYSTAQ VVHLVSPCSD HCPILLNLVV 360
  361 KDPHQLRQKC LHYEIVWERE PEATQVIEEA WVVAGEKADL GDINKALAKV MTALRSWSRA 420
  421 KVKNVGRELE KARKKLAELI ESNADRTVIR NATDHMNELL YREEMLWLQR SRVNWLKDED 480
  481 RNTKFFHSRA VWRAKKNKIS KLRDANETVH SSTMKLESMA TEYFQDVYTA DPNLNPETVT 540
  541 RLIQEKVTDI MNEKLCEDFT EDEISQAIFQ IGPLKSPGPD GFPARFYQRN WGTIKADIIG 600
  601 AVRRFFQTGL MPEGVNDTAI VLIPKKEQPV DLRDFRPISL CNVVYKVVSK CLVNRLRPIL 660
  661 DDLVSVEQSA FVQGRMITDN ALLAFECFHA MQKNKKANHA ACAYKLDLSK AYDRVDWRFL 720
  721 EMAMNKLGFA RRWVNWIMKC VTSVRYMVKF NGTLLQSFAP TRGLRQGDPL LPFLFLFVAD 780
  781 GLSLLLKEKV AQNSLTPFKV CRAAPGISHL LFADDTLLFF KAHQREAEVV KEVLSSYAMG 840
  841 TGQLINPAKC SILMGGASTP AVSEAISEIL QVERDRFEDR YLGFPTPEGR MHKGRFQSLQ 900
  901 AKIWKRVIQW GENHLSTGGK EVLIKAVIQA IPVYVMGIFK LPESVIDDLT KLTKNFWWDS 960
  961 MNGQRKTHWK AWDSLTKPKS LGGLGFRDYR LFNQALLARQ AWRLITYPDS LCARVLKAKY1020
 1021 FPHGSLIDTS FGSNSSPAWR SIEYGLDLLK KGIIWRVGNG NSIRIWRDSW LPRDHSRRPI1080
 1081 TGKANCRLKW VSDLITEDGS WDVPKIHQYF HNLDAEVILN ICISSRSEED FIAWHPDKNG1140
 1141 MFSVRSAYRL AAQLVNIEES SSSGTNNINK AWEMIWKCKV PQKVKIFAWR VASNCLATMV1200
 1201 NKKKRKLEQS DMCQICDREN EDDAHALCRC IQASQLWSCM HKSGSVSVDI KASVLGRFWL1260
 1261 FDCLEKIPEY EQAMFLMTLW RNWYVRNELI HGKSAPPTET SQRFIQSYVD LLFQIRQAPQ1320
 1321 ADLVKGKHVV RTVPLKGGPK YRVLNNHQPC WERPKDGWMK LNVDGSFDAS SGKGGLGMIL1380
 1381 RNSAGDIIFT SCKPLERCNN PLESELRACV EGLKLAIHWT LLPIQVETDC ASVVQLLQGI1440
 1441 GRDFSVLANI IHEARHLLQT PSRTNTKVTT QKQTLRPNAT AHCMPTDRPT EPGPRGGPGG1500
 1501 HPSRRFRPPS HPLTRGPHTH AAPPLAAALA CPHGEQPDAK ILPAATPPMS DDHSGGGGEQ1560
 1561 RQCRRGFAVD VVELGAALAL ADMAGAAVKP AMQLQLQPTA AQEEDEEMAT TRLSLQLGNN1620
 1621 VGSIIQSSSC SSSGSSAGLP APPPPPPPAT AYGTKPLHML TEEEKEAKRL RRVLANRESA1680
 1681 RQTILRRQAI RDELARKVAD LSTQNESMKK LKLAINSNDV VFGGAGEGDS DAGVPLTEGD1740
 1741 KQAAQRTGTA SSFAFLVLIN LLVV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..120] deduced N/A No confident structure predictions are available.
    2 View Details [121..369] PSI-BLAST 23.69897 Endonuclease domain of human LINE1 ORF2p
    3 View Details [370..441] deduced N/A No confident structure predictions are available.
    4 View Details [442..586] MSA 1.952992 View MSA. No confident structure predictions are available.
    5 View Details [587..763] MSA 22.084996 View MSA. No confident structure predictions are available.
    6 View Details [764..975] MSA 4.982996 View MSA. No confident structure predictions are available.
    7 View Details [976..1179] deduced N/A No confident structure predictions are available.
    8 View Details [1180..1340] MSA 8.419996 View MSA. No confident structure predictions are available.
    9 View Details [1341..1503] MSA 9.270995 View MSA. No confident structure predictions are available.
    10 View Details [1504..1641] deduced N/A No confident structure predictions are available.
    11 View Details [1642..1764] PSI-BLAST 9.045757 No description for 2e42A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle