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View Structure Prediction Details

Protein: CHR8_ARATH
Organism: Arabidopsis thaliana
Length: 1187 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CHR8_ARATH.

Predicted Domain #1
Region A:
Residues: [1-349]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEDEDQFLL SSLGVTSANP EDLEQKILDE ATKKPDNDEG GSVEEKSTQL EGTNLLSSSQ  60
   61 NELLNKLRAV KFEIDAVAST VENVDEIAAE KGLKKDDESD LQGLHSGSAL QHALATDRLR 120
  121 SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK 180
  181 VVSFREDTDF DAVFDGASAG FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP 240
  241 EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP 300
  301 DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [350-989]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CEEEELDDFD DADDNERSSV QLEGGLNIPE CIFRKLFDYQ RVGVQWLWEL HCQRAGGIIG  60
   61 DEMGLGKTIQ VLSFLGSLHF SKMYKPSIII CPVTLLRQWR REAQKWYPDF HVEILHDSAQ 120
  121 DSGHGKGQGK ASESDYDSES SVDSDHEPKS KNTKKWDSLL NRVLNSESGL LITTYEQLRL 180
  181 QGEKLLNIEW GYAVLDEGHR IRNPNSDITL VCKQLQTVHR IIMTGAPIQN KLTELWSLFD 240
  241 FVFPGKLGVL PVFEAEFSVP ITVGGYANAS PLQVSTAYRC AVVLRDLIMP YLLRRMKADV 300
  301 NAHLTKKTEH VLFCSLTVEQ RSTYRAFLAS SEVEQIFDGN RNSLYGIDVM RKICNHPDLL 360
  361 EREHSHQNPD YGNPERSGKM KVVAEVLKVW KQQGHRVLLF SQTQQMLDIL ESFLVANEYS 420
  421 YRRMDGLTPV KQRMALIDEF NNSEDMFVFV LTTKVGGLGT NLTGANRVII FDPDWNPSND 480
  481 MQARERAWRI GQKKDVTVYR LITRGTIEEK VYHRQIYKHF LTNKILKNPQ QRRFFKARDM 540
  541 KDLFILKDDG DSNASTETSN IFSQLAEEIN IVGVQSDKKP ESDTQLALHK TAEGSSEQTD 600
  601 VEMTDKTGEA MDEETNILKS LFDAHGIHSA VNHDAIMNAN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 94.154902
Match: 1z3iX
Description: Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [990-1187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEEEKMRLEH QASQVAQRAA EALRQSRMLR SRESISVPTW TGRSGCAGAP SSVRRRFGST  60
   61 VNSRLTQTGD KPSAIKNGIS AGLSSGKAPS SAELLNRIRG SREQAIGVGL EQPQSSFPSS 120
  121 SGSSSRVGSL QPEVLIRKIC SFVQQKGGSA DTTSIVNHFR DIVSFNDKQL FKNLLKEIAT 180
  181 LEKDQNRSFW VLKSEYKD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.221849
Match: 1ofcX
Description: nucleosome recognition module of ISWI ATPase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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