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View Structure Prediction Details

Protein: gi|20197796, gi|...
Organism: Arabidopsis thaliana
Length: 434 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20197796, gi|....

Description E-value Query
Range
Subject
Range
gi|76588070, gi|... - gi|76796566|ref|ZP_00778925.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus ATC...
gi|241885225, gi... - gi|241902510|ref|ZP_04787244.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii subsp....
309.0 [0..67] [430..1]

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Predicted Domain #1
Region A:
Residues: [1-62]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDKKKRNK KKKRSTGNKR KMTTEQSEAF KSITDWLILG SSPSLSSSSD DFAVNINSGS  60
   61 LR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [63-434]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CGEKVVFELH SHSNRSDGFL SPSKVVERAY NNGVKVLSLT DHDTMAGVPE AVEAGRRFGI  60
   61 KIIPGIEIST LFGLRDSGSE EPVHILAYYG TSGPALYDEL EDFLVKIRDG RFVRGREMVL 120
  121 KLNKLKIPLK WEHVTRIAGK DVAPGRMHVA RALLEAGYVE NLRQAFTKYL HDGGPAYATG 180
  181 TEPMAEEAVK LICKTGGVAV LAHPWALKNH VGIIRRLKDA GLHGVEVYRS DGKLEVFSEL 240
  241 ADTYNLLKLG GSDYHGKGGR NESELGSVNL PVTALQDFLN VGRPIWCEAI KATMRAFLDQ 300
  301 PSDSNLSNIL RFDKARILKG NSAWSCGKEL MDRCLAIWLT SDERNSNDFE ALRLKLSFVP 360
  361 IMSNGTCVTV GP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.522879
Match: 2hnhA
Description: No description for 2hnhA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle