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View Structure Prediction Details

Protein: TERT_ARATH
Organism: Arabidopsis thaliana
Length: 1123 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for TERT_ARATH.

Predicted Domain #1
Region A:
Residues: [1-159]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRKPRHRVP EILWRLFGNR ARNLNDAIVD LIPNRNIQPE QCRCRGQGCL GCSSDKPAFL  60
   61 LRSDDPIHYR KLLHRCFVVL HEQTPPLLDF SPTSWWSQRE IVERIIEMMQ SGCDCQNVIC 120
  121 ARYDKYDQSS PILELLTSSS WEFLLKRVGH DVMVYLLQQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [160-354]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSIFLPLLGK KHQQVSGPPL CIKHKRTLSV HENKRKRDDN VQPPTKRQWL SSAVDDCPKD  60
   61 DSATITPIVG EDVDQHREKK TTKRSRIYLK RRRKQRKVNF KKVDCNAPCI TPSTNGKVST 120
  121 GNDEMNLHIG INGSLTDFVK QAKQVKRNKN FKFGLSETYS VIPPNHILKT LRPNCSDSKL 180
  181 LMNHIFGEVN VWSTT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.30103
Match: 1vybA
Description: Endonuclease domain of human LINE1 ORF2p
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [355-564]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSHGKGNCPS GSICLYHSLL KSLKNLIGKT KSSHLKMLLD KHCPVLLLQE DALKSGTTSQ  60
   61 SSRRQKADKL PHGSSSSQTG KPKCPSVEER KLYCTNDQVV SFIWAICRYI VPESLLGTTH 120
  121 QMRVLRKNIA WFVSRRRNEK CTVNQFLHKV KPSDFPFFAR KELCCMVNGH ELQSESIRST 180
  181 QQMLCTKWIS WLFLEIVKKL VHFNFYATES 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [565-654]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGGRLNIYYY RKRSWERLIS KEISKALDGY VLVDDAEAES SRKKLSKFRF LPKANGVRMV  60
   61 LDFSSSSRSQ SLRDTHAVLK DIQLKEPDVL 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [655-850]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSSVFDHDDF YRNLCPYLIH LRSQSGELPP LYFVVADVFK AFDSVDQGKL LHVIQSFLKD  60
   61 EYILNRCRLV CCGKRSNWVN KILVSSDKNS NFSRFTSTVP YNALQSIVVD KGENHRVRKK 120
  121 DLMVWIGNML KNNMLQLDKS FYVQIAGIPQ GHRLSSLLCC FYYGHLERTL IYPFLEEASK 180
  181 DVSSKECSRE EELIIP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [851-932]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSYKLLRFID DYLFVSTSRD QASSFYHRLK HGFKDYNCFM NETKFCINFE DKEEHRCSSN  60
   61 RMFVGDNGVP FVRWTGLLIN SR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [933-1123]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFEVQVDYTR YLSGHISSTF SVAWQNKPVR NLRQKLCYFL VPKCHPILFD SNINSGEIVR  60
   61 LNIYQIFLLA AMKFHCYVYE VSRFWKLHPQ TLFKFITISV RYMFRLINRR VRRINTGSSF 120
  121 RPVLKLYKEE VIWLGLDAYI QVLKKKNSRY RMLLIYLKSA LSKHSLSQQL SSELRYATDR 180
  181 SNSSSLWKLN Y

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle