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View Structure Prediction Details

Protein: TLOV1_ARATH
Organism: Arabidopsis thaliana
Length: 399 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TLOV1_ARATH.

Description E-value Query
Range
Subject
Range
gi|67940422, gi|... - gi|67940422|ref|ZP_00532842.1| PAS [Chlorobium phaeobacteroides BS1], gi|67913366|gb|EAM62794.1| PAS...
234.0 [0..10] [396..140]

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Predicted Domain #1
Region A:
Residues: [1-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTKSSESV FTEEEEEDSF SGRYTLWIKE ALEELPHNFT ITDPFISGHP IVFASLGFLK  60
   61 MTGYSREEVI GRNGKVFQGP KTNRRSIMEI REAIREERSV QVSLLNYRKS GSPFWMLFHM 120
  121 CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.0
Match: 2pr5A
Description: No description for 2pr5A was found.

Predicted Domain #2
Region A:
Residues: [164-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFGSCRREVC FGNFVCQDRA LPVECDDDEQ GLEDWEQCEA SESEKLKATE AINNVLSILV  60
   61 HYSELSGRLV CGKRYCLRGV DCLSSSLVIS L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [255-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRIKQSFVLT NPCLPDMPII YASDAFLTLT GYKRQEVLGQ NCRFLSGVDT DSSVLYEMKE  60
   61 CILKGQSCTV QILNYSNRKD KSSFWNLLHI SPVRNASGKT AYFVGVQVEA SCRNTEIKEL 120
  121 RPETRQLSVV GAVRVAVRSS LMVTC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.09691
Match: 2b02A
Description: No description for 2b02A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle