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View Structure Prediction Details

Protein: TLOV1_ARATH
Organism: Arabidopsis thaliana
Length: 399 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TLOV1_ARATH.

Description E-value Query
Range
Subject
Range
gi|67940422, gi|... - gi|67940422|ref|ZP_00532842.1| PAS [Chlorobium phaeobacteroides BS1], gi|67913366|gb|EAM62794.1| PAS...
234.0 [0..10] [396..140]

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Predicted Domain #1
Region A:
Residues: [1-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTKSSESV FTEEEEEDSF SGRYTLWIKE ALEELPHNFT ITDPFISGHP IVFASLGFLK  60
   61 MTGYSREEVI GRNGKVFQGP KTNRRSIMEI REAIREERSV QVSLLNYRKS GSPFWMLFHM 120
  121 CPVFGKDDGK VTNFVAVQVP ISGREHHRKK LRNVGDLSSD TSP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.0
Match: 2pr5A
Description: No description for 2pr5A was found.

Predicted Domain #2
Region A:
Residues: [164-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFGSCRREVC FGNFVCQDRA LPVECDDDEQ GLEDWEQCEA SESEKLKATE AINNVLSILV  60
   61 HYSELSGRLV CGKRYCLRGV DCLSSSLVIS L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [255-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRIKQSFVLT NPCLPDMPII YASDAFLTLT GYKRQEVLGQ NCRFLSGVDT DSSVLYEMKE  60
   61 CILKGQSCTV QILNYSNRKD KSSFWNLLHI SPVRNASGKT AYFVGVQVEA SCRNTEIKEL 120
  121 RPETRQLSVV GAVRVAVRSS LMVTC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.09691
Match: 2b02A
Description: No description for 2b02A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle