YRC Public Data Repository - Protein Structure Prediction

Protein:	CX5C4_ARATH
Organism:	Arabidopsis thaliana
Length:	65 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CX5C4_ARATH.

Description	E-value	Query Range	Subject Range
CX5C2_ARATH - Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana GN=At3g62400 PE=2 SV=1	111.0	[0..5]	[65..4]
CX5C2_HELAN - Cytochrome c oxidase subunit 5C-2 OS=Helianthus annuus GN=COX5C2 PE=3 SV=1	109.0	[0..6]	[65..5]
COX5C_ORYSJ - Cytochrome c oxidase subunit 5C OS=Oryza sativa subsp. japonica GN=COX5C PE=3 SV=3 COX5C_ORYSA - Cytochrome c oxidase polypeptide Vc (EC 1.9.3.1) (Cytochrome c oxidase subunit 5c) - Oryza sativa (R...	109.0	[0..6]	[64..5]
gi\|357161933\|ref... - PREDICTED: cytochrome c oxidase subunit 5C-like [Brachypodium distachyon], PREDICTED: cytochrome c o... COX5C_HORVU - Cytochrome c oxidase subunit 5C OS=Hordeum vulgare GN=COX5C PE=3 SV=3 gi\|1070356 - gi\|1070356\|emb\|CAA92107.1\| cytochrome c oxidase, Vc subunit [Hordeum vulgare subsp. vulgare]	106.0	[0..6]	[64..5]
COX5C_IPOBA - Cytochrome c oxidase subunit 5C OS=Ipomoea batatas GN=COX5C PE=1 SV=3	104.0	[0..7]	[65..6]
gi\|4105786 - gi\|4105786\|gb\|AAD02550.1\| PGPS/D8 [Petunia x hybrida]	92.0	[0..6]	[64..4]

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Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANVQKIGKA VYKGPSVVKE IIYGITLGFA VGGLWKMHHW NNQRRTKEFY DLLEKGEISV  60
   61 VVEDE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.769551
Match:	PF05799.3
Description:	No description for PF05799.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits