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View Structure Prediction Details

Protein: CX5C4_ARATH
Organism: Arabidopsis thaliana
Length: 65 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CX5C4_ARATH.

Description E-value Query
Range
Subject
Range
CX5C2_ARATH - Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana GN=At3g62400 PE=2 SV=1
111.0 [0..5] [65..4]
CX5C2_HELAN - Cytochrome c oxidase subunit 5C-2 OS=Helianthus annuus GN=COX5C2 PE=3 SV=1
109.0 [0..6] [65..5]
COX5C_ORYSJ - Cytochrome c oxidase subunit 5C OS=Oryza sativa subsp. japonica GN=COX5C PE=3 SV=3
COX5C_ORYSA - Cytochrome c oxidase polypeptide Vc (EC 1.9.3.1) (Cytochrome c oxidase subunit 5c) - Oryza sativa (R...
109.0 [0..6] [64..5]
gi|357161933|ref... - PREDICTED: cytochrome c oxidase subunit 5C-like [Brachypodium distachyon], PREDICTED: cytochrome c o...
COX5C_HORVU - Cytochrome c oxidase subunit 5C OS=Hordeum vulgare GN=COX5C PE=3 SV=3
gi|1070356 - gi|1070356|emb|CAA92107.1| cytochrome c oxidase, Vc subunit [Hordeum vulgare subsp. vulgare]
106.0 [0..6] [64..5]
COX5C_IPOBA - Cytochrome c oxidase subunit 5C OS=Ipomoea batatas GN=COX5C PE=1 SV=3
104.0 [0..7] [65..6]
gi|4105786 - gi|4105786|gb|AAD02550.1| PGPS/D8 [Petunia x hybrida]
92.0 [0..6] [64..4]

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Predicted Domain #1
Region A:
Residues: [1-65]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANVQKIGKA VYKGPSVVKE IIYGITLGFA VGGLWKMHHW NNQRRTKEFY DLLEKGEISV  60
   61 VVEDE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 44.769551
Match: PF05799.3
Description: No description for PF05799.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.642 N/A N/A a.64.1 Saposin
View Download 0.642 N/A N/A a.64.1 Saposin
View Download 0.553 N/A N/A a.52.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View Download 0.486 N/A N/A a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.483 N/A N/A a.64.1 Saposin
View Download 0.463 N/A N/A a.2.2 Ribosomal protein L29 (L29p)
View Download 0.428 N/A N/A a.52.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View Download 0.419 N/A N/A a.4.5 "Winged helix" DNA-binding domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle