YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|18377845, gi|...
Organism: Arabidopsis thaliana
Length: 283 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18377845, gi|....

Description E-value Query
Range
Subject
Range
gi|15810219 - gi|15810219|gb|AAL07227.1| putative lactoylglutathione lyase [Arabidopsis thaliana]
248.0 [0..1] [283..1]

Back

Predicted Domain #1
Region A:
Residues: [1-142]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEASDLLEW PKKDNRRFLH VVYRVGDLDR TIEFYTEVFG MKLLRKRDIP EEKYSNAFLG  60
   61 FGPETSNFVV ELTYNYGVSS YDIGTGFGHF AISTQDVSKL VENVRAKGGN VTREPGPVKG 120
  121 GGSVIAFVKD PDGYTFELIQ RG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.0
Match: 1f9zA
Description: Glyoxalase I (lactoylglutathione lyase)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [143-283]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTPEPFCQVM LRVGDLDRAI KFYEKALGMR LLRKIERPEY KYTIGMMGYA EEYESIVLEL  60
   61 TYNYDVTEYT KGNAYAQIAI GTDDVYKSGE VIKIVNQELG GKITREAGPL PGLGTKIVSF 120
  121 LDPDGWKTVL VDNKDFLKEL E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.69897
Match: 1twuA
Description: Structural Genomics, 2.0A crystal structure of a hypothetical protein yycE from Bacillus subtilis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
lactoylglutathione lyase activity 3.91334658149719 bayes_pls_golite062009
binding 1.68530537296561 bayes_pls_golite062009
carbon-sulfur lyase activity 1.44168339433372 bayes_pls_golite062009
catalytic activity 1.21778090213032 bayes_pls_golite062009
protein binding 0.28912087714501 bayes_pls_golite062009
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen 0.0991913830827656 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle