YRC Public Data Repository - Protein Structure Prediction

Protein:	PNSB1_ARATH
Organism:	Arabidopsis thaliana
Length:	461 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PNSB1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|215737469, gi... - gi\|51979659\|ref\|XP_507576.1\| PREDICTED OJ1118_F05.12 gene product [Oryza sativa (japonica cultivar-g...	240.0	[0..49]	[459..49]
gi\|86147280, gi\|... - gi\|86147280\|ref\|ZP_01065595.1\| ADP-heptose--LPS heptosyltransferase II WaaF [Vibrio sp. MED222], gi\|...	221.0	[0..116]	[454..1]
gi\|2145518, gi\|5... - gi\|599920\|emb\|CAA85504.1\| ADP-heptose:LPS heptosyltransferase II [Neisseria gonorrhoeae], pir\|\|S6129...	220.0	[0..117]	[453..4]
gi\|59718267, gi\|... - gi\|59801372\|ref\|YP_208084.1\| ADP-heptose--LPS heptosyltransferase II [Neisseria gonorrhoeae FA 1090]...	220.0	[0..117]	[453..4]
gi\|9654644, gi\|1... - gi\|9654644\|gb\|AAF93412.1\| ADP-heptose--LPS heptosyltransferase II [Vibrio cholerae O1 biovar El Tor ... gi\|11279322 - pir\|\|F82349 ADP-heptose-LPS heptosyltransferase II VC0236 [imported] - Vibrio cholerae (strain N1696... gi\|229606472, gi... - gi\|229606472\|ref\|YP_002877120.1\| hypothetical protein VCD_001381 [Vibrio cholerae MJ-1236], gi\|22936... gi\|121549452, gi... - gi\|121586332\|ref\|ZP_01676121.1\| ADP-heptose--LPS heptosyltransferase II [Vibrio cholerae 2740-80], g... gi\|125618963 - gi\|125618963\|gb\|EAZ47495.1\| ADP-heptose--LPS heptosyltransferase II [Vibrio cholerae MO10] gi\|153221435, gi... - gi\|153221435\|ref\|ZP_01952393.1\| ADP-heptose--LPS heptosyltransferase II [Vibrio cholerae MAK 757], g... gi\|229509334, gi... - gi\|229509334\|ref\|ZP_04398817.1\| hypothetical protein VCE_000734 [Vibrio cholerae B33], gi\|229353649\|... gi\|126511184, gi... - gi\|153818295\|ref\|ZP_01970962.1\| ADP-heptose--LPS heptosyltransferase II [Vibrio cholerae NCTC 8457],... gi\|229506964, gi... - gi\|229506964\|ref\|ZP_04396472.1\| hypothetical protein VCF_002188 [Vibrio cholerae BX 330286], gi\|2293... gi\|229516281, gi... - gi\|229516281\|ref\|ZP_04405729.1\| hypothetical protein VCC_000295 [Vibrio cholerae RC9], gi\|229346707\|... gi\|227012083, gi... - gi\|227116633\|ref\|YP_002818529.1\| ADP-heptose--LPS heptosyltransferase II [Vibrio cholerae O395], gi\|... gi\|227080456, gi... - gi\|227080456\|ref\|YP_002809007.1\| ADP-heptose--LPS heptosyltransferase II [Vibrio cholerae M66-2], gi...	220.0	[0..115]	[457..1]
gi\|90437980, gi\|... - gi\|90580909\|ref\|ZP_01236711.1\| ADP-heptose:LPS heptosyltransferase [Vibrio angustum S14], gi\|9043798...	218.0	[0..116]	[454..1]
gi\|11279324 - pir\|\|C81073 ADP-heptose-LPS heptosyltransferase II NMB1527 [imported] - Neisseria meningitidis (stra... gi\|7226771, gi\|1... - gi\|7226771\|gb\|AAF41882.1\| ADP-heptose--LPS heptosyltransferase II [Neisseria meningitidis MC58], gi\|...	218.0	[0..117]	[453..4]
gi\|53728718 - gi\|53728718\|ref\|ZP_00131820.2\| COG0859: ADP-heptose:LPS heptosyltransferase [Haemophilus somnus 2336...	218.0	[0..113]	[455..31]
gi\|238726301, gi... - gi\|77976340\|ref\|ZP_00831837.1\| COG0859: ADP-heptose:LPS heptosyltransferase [Yersinia intermedia ATC...	218.0	[0..116]	[457..1]
gi\|120866904, gi... - gi\|121635198\|ref\|YP_975443.1\| ADP-heptose:LPS heptosyltransferase II [Neisseria meningitidis FAM18],... gi\|11279323 - pir\|\|B81869 lipopolysaccharide heptosyltransferase (EC 2.4.99.-) II NMA1727 [similarity] - Neisseria... gi\|15794620, gi\|... - gi\|7380368\|emb\|CAB84955.1\| ADP-heptose:LPS heptosyltransferase II [Neisseria meningitidis Z2491], gi...	217.0	[0..117]	[453..4]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSLPLLPK PISPFFKTPP FSTSKPLVFL NFQTRLTSRS SDVSVNLKKK NNPWLDPFDS  60
   61 GEDPDNEYGS LFADGKQDED PRPPDNPDNP YGFLKFPKGY TVELASLPLK IRGD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-461]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRRCCCVISG GVYENLLFFP TIQLIKDRYP GVQVDILTTE RGKQTYELNK NVRWANVYDP  60
   61 DDHWPEPAEY TDMIGLLKGR YYDMVLSTKL AGLGHAAFLF MTTARDRVSY IYPNVNSAGA 120
  121 GLMLSETFTA ENTNLSELGY SMYTQMEDWL GRPFRSVPRT PLLPLRVSIS RKVKEVVAAK 180
  181 YRNAGAVTGK FIVIHGIESD SKASMQSKGD ADSLLSLEKW AKIIKGVRGF KPVFVIPHEK 240
  241 ERENVEDFVG DDTSIVFITT PGQLAALIND SAGVIATNTA AIQLANARDK PCIGLFSSEE 300
  301 KGKLFVPYAE EKSNCVIIAS KTGKLADIDI GTVKNAMQVF EGSLALV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.522879
Match:	1pswA
Description:	ADP-heptose LPS heptosyltransferase II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits