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View Structure Prediction Details

Protein: WUS_ARATH
Organism: Arabidopsis thaliana
Length: 292 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WUS_ARATH.

Description E-value Query
Range
Subject
Range
gi|4090200 - gi|4090200|emb|CAA09986.1| WUSCHEL protein [Arabidopsis thaliana]
190.0 [0..1] [292..1]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPPQHQHHH HQADQESGNN NNNKSGSGGY TCRQTSTRWT PTTEQIKILK ELYYNNAIRS  60
   61 PTADQIQKIT ARLRQFGKIE GKNVFYWFQN HKARERQKKR FNGTNMTTPS SSPNS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.39794
Match: 1pufA
Description: Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.334577365229545 bayes_pls_golite062009
transcription regulator activity 0.0696342306231097 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [116-292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VMMAANDHYH PLLHHHHGVP MQRPANSVNV KLNQDHHLYH HNKPYPSFNN GNLNHASSGT  60
   61 ECGVVNASNG YMSSHVYGSM EQDCSMNYNN VGGGWANMDH HYSSAPYNFF DRAKPLFGLE 120
  121 GHQEEEECGG DAYLEHRRTL PLFPMHGEDH INGGSGAIWK YGQSEVRPCA SLELRLN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle