YRC Public Data Repository - Protein Structure Prediction

Protein:	ATPD_ARATH
Organism:	Arabidopsis thaliana
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPD_ARATH.

Description	E-value	Query Range	Subject Range
gi\|18491181 - gi\|18491181\|gb\|AAL69493.1\| putative H+-transporting ATP synthase [Arabidopsis thaliana]	234.0	[0..1]	[234..17]
ATPD_SORBI - ATP synthase delta chain, chloroplastic OS=Sorghum bicolor GN=ATPD PE=2 SV=1	207.0	[0..1]	[232..1]
ATPD_TOBAC - ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1	206.0	[0..1]	[233..1]
gi\|226262, gi\|170098 - gi\|226262\|prf\|\|1503275A ATP synthase delta, gi\|170098\|gb\|AAA34024.1\| ATP synthase delta subunit prec...	199.0	[0..1]	[233..1]
ATPD_PEA - ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1	197.0	[0..1]	[233..1]
gi\|115448701, gi... - gi\|50912809\|ref\|XP_467812.1\| putative H(+)-transporting ATP synthase [Oryza sativa (japonica cultiva...	184.0	[0..1]	[232..1]
gi\|311237, gi\|10... - gi\|311237\|emb\|CAA46804.1\| H(+)-transporting ATP synthase [Zea mays], pir\|\|S43729 H+-transporting two...	183.0	[0..50]	[232..1]
gi\|91226235, gi\|... - gi\|91226235\|ref\|ZP_01261075.1\| F0F1 ATP synthase subunit delta [Vibrio alginolyticus 12G01], gi\|9118...	180.0	[0..50]	[227..6]
gi\|74001192 - gi\|74001192\|ref\|XP_858040.1\| PREDICTED: similar to ATP synthase O subunit, mitochondrial precursor (...	179.0	[0..20]	[226..22]

Back

Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLQQTLFS LQSKLPPSSF QIARSLPLRK TFPIRINNGG NAAGARMSAT AASSYAMALA  60
   61 DVAKRNDTME LTVTDIEKLE QVFSDPQVLN FFANPTITVE KKRQVIDDIV KSSSLQSHTS 120
  121 NFLNVLVDAN RINIVTEIVK EFELVYNKLT DTQLAEVRSV VKLEAPQLAQ IAKQVQKLTG 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1abvA
Description:	N-TERMINAL DOMAIN OF THE DELTA SUBUNIT OF THE F1F0-ATP SYNTHASE FROM ESCHERICHIA COLI, NMR, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [181-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKNVRVKTVI DASLVAGFTI RYGESGSKLI DMSVKKQLED IASQLELGEI QLAT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.374	N/A	N/A	d.52.8	Description not found.
View	Download	0.347	N/A	N/A	d.58.11	EF-G/eEF-2 domains III and V
View	Download	0.336	N/A	N/A	b.34.13	Chromo domain-like
View	Download	0.315	N/A	N/A	d.10.1	DNA-binding domain
View	Download	0.307	N/A	N/A	d.253.1	Description not found.
View	Download	0.266	N/A	N/A	b.84.2	Rudiment single hybrid motif
View	Download	0.249	N/A	N/A	d.52.5	Probable GTPase Der, C-terminal domain
View	Download	0.249	N/A	N/A	d.52.5	Probable GTPase Der, C-terminal domain
View	Download	0.243	N/A	N/A	d.10.1	DNA-binding domain
View	Download	0.209	N/A	N/A	d.58.3	Protease propeptides/inhibitors

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits