YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11358167, gi\|...
Organism:	Arabidopsis thaliana
Length:	332 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11358167, gi|....

Description	E-value	Query Range	Subject Range
gi\|20148499, gi\|... - gi\|30695696\|ref\|NP_850739.1\| OTU-like cysteine protease family protein [Arabidopsis thaliana], gi\|20...	215.0	[0..17]	[332..1]
gi\|57108027 - gi\|57108027\|ref\|XP_544171.1\| PREDICTED: similar to CG7857-PA [Canis familiaris]	209.0	[0..33]	[329..115]
gi\|109476175, gi... - gi\|157820311\|ref\|NP_001100109.1\| OTU domain containing 6B [Rattus norvegicus], gi\|149045466\|gb\|EDL98...	202.0	[0..13]	[331..28]
gi\|5679842 - gi\|5679842\|emb\|CAB51835.1\| l1332.6 [Oryza sativa Indica Group] gi\|5679842, gi\|1... - gi\|90399337\|emb\|CAH68346.1\| H0313F03.22 [Oryza sativa (indica cultivar-group)], gi\|5679842\|emb\|CAB51...	196.0	[0..20]	[325..26]
gi\|38344330, gi\|... - gi\|50928773\|ref\|XP_473914.1\| OSJNBa0058K23.12 [Oryza sativa (japonica cultivar-group)], gi\|38344330\|...	194.0	[0..21]	[325..23]
OTUD6A - OTU domain containing 6A	187.0	[0..27]	[328..7]
gi\|76630286 - gi\|76630286\|ref\|XP_874339.1\| PREDICTED: similar to CG7857-PA [Bos taurus]	184.0	[0..17]	[329..1]
gi\|74212974 - gi\|74212974\|dbj\|BAE33424.1\| unnamed protein product [Mus musculus]	181.0	[0..17]	[329..1]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADNKTSEGI VSEETPMDAS QEQQHETVEE MLARHRQEIK QLQNKETEMK KAAAKGSKAE  60
   61 QKAKKKQVED DISKLSTKLK DKQLKELASQ GFSSSSSNNI AKDETTEKKG DIDTLVRAIA 120
  121 GVSVTAQQEH SKPSKSVKRR EKRAKEEADR EQRIKEEQSH VKSDRMVENA KLEKKLKPLG 180
  181 LTVSEIKPDG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [191-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HCLYRAVENQ LANRSGGASP YTYQNLREMA ASYMREHKTD FLPFFLSETE GDSNSGSAEE  60
   61 RFEKYCREVE STAAWGSQLE LGALTHCLRK HIKVYSGSFP DVEMGKEYRS GDDSSLMLSY 120
  121 HRHAFGLGEH YNSVVLVNNI TG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.74
Match:	1tffA
Description:	Structure of Otubain-2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits