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View Structure Prediction Details

Protein: gi|11358167, gi|...
Organism: Arabidopsis thaliana
Length: 332 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11358167, gi|....

Description E-value Query
Range
Subject
Range
gi|20148499, gi|... - gi|30695696|ref|NP_850739.1| OTU-like cysteine protease family protein [Arabidopsis thaliana], gi|20...
215.0 [0..17] [332..1]
gi|57108027 - gi|57108027|ref|XP_544171.1| PREDICTED: similar to CG7857-PA [Canis familiaris]
209.0 [0..33] [329..115]
gi|109476175, gi... - gi|157820311|ref|NP_001100109.1| OTU domain containing 6B [Rattus norvegicus], gi|149045466|gb|EDL98...
202.0 [0..13] [331..28]
gi|5679842 - gi|5679842|emb|CAB51835.1| l1332.6 [Oryza sativa Indica Group]
gi|5679842, gi|1... - gi|90399337|emb|CAH68346.1| H0313F03.22 [Oryza sativa (indica cultivar-group)], gi|5679842|emb|CAB51...
196.0 [0..20] [325..26]
gi|38344330, gi|... - gi|50928773|ref|XP_473914.1| OSJNBa0058K23.12 [Oryza sativa (japonica cultivar-group)], gi|38344330|...
194.0 [0..21] [325..23]
OTUD6A - OTU domain containing 6A
187.0 [0..27] [328..7]
gi|76630286 - gi|76630286|ref|XP_874339.1| PREDICTED: similar to CG7857-PA [Bos taurus]
184.0 [0..17] [329..1]
gi|74212974 - gi|74212974|dbj|BAE33424.1| unnamed protein product [Mus musculus]
181.0 [0..17] [329..1]

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Predicted Domain #1
Region A:
Residues: [1-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADNKTSEGI VSEETPMDAS QEQQHETVEE MLARHRQEIK QLQNKETEMK KAAAKGSKAE  60
   61 QKAKKKQVED DISKLSTKLK DKQLKELASQ GFSSSSSNNI AKDETTEKKG DIDTLVRAIA 120
  121 GVSVTAQQEH SKPSKSVKRR EKRAKEEADR EQRIKEEQSH VKSDRMVENA KLEKKLKPLG 180
  181 LTVSEIKPDG 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.69897
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [191-332]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HCLYRAVENQ LANRSGGASP YTYQNLREMA ASYMREHKTD FLPFFLSETE GDSNSGSAEE  60
   61 RFEKYCREVE STAAWGSQLE LGALTHCLRK HIKVYSGSFP DVEMGKEYRS GDDSSLMLSY 120
  121 HRHAFGLGEH YNSVVLVNNI TG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.74
Match: 1tffA
Description: Structure of Otubain-2
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle