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View Structure Prediction Details

Protein: TC132_ARATH
Organism: Arabidopsis thaliana
Length: 1206 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for TC132_ARATH.

Predicted Domain #1
Region A:
Residues: [1-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDGTEFVVR SDREDKKLAE DRISDEQVVK NELVRSDEVR DDNEDEVFEE AIGSENDEQE  60
   61 EEEDPKRELF ESDDLPLVET LKSSMVEHEV EDFEEAVGDL DETSSNEGGV KDFTAVGESH 120
  121 GAGEAEFDVL ATKMNGDKGE GGGGGSYDKV ESSLDVVDTT ENATSTNTNG SNLAAEHVGI 180
  181 ENGKTHSFLG NGIASPKNKE VVAEVIPKDD GIEEPWND

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [219-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIEVDNWEER VDGIQTEQEV EEGEGTTENQ FEKRTEEEVV EGEGTSKNLF EKQTEQDVVE  60
   61 GEGTSKDLFE NGSVCMDSES EAERNGETGA AYTSNIVTNA SGDNEV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [325-580]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSAVTSSPLE ESSSGEKGET EGDSTCLKPE QHLASSPHSY PESTEVHSNS GSPGVTSREH  60
   61 KPVQSANGGH DVQSPQPNKE LEKQQSSRVH VDPEITENSH VETEPEVVSS VSPTESRSNP 120
  121 AALPPARPAG LGRASPLLEP ASRAPQQSRV NGNGSHNQFQ QAEDSTTTEA DEHDETREKL 180
  181 QLIRVKFLRL AHRLGQTPHN VVVAQVLYRL GLAEQLRGRN GSRVGAFSFD RASAMAEQLE 240
  241 AAGQDPLDFS CTIMVL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.69897
Match: 1xzpA
Description: Structure of the GTP-binding protein TrmE from Thermotoga maritima
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [581-1061]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKSGVGKSAT INSIFDEVKF CTDAFQMGTK RVQDVEGLVQ GIKVRVIDTP GLLPSWSDQA  60
   61 KNEKILNSVK AFIKKNPPDI VLYLDRLDMQ SRDSGDMPLL RTISDVFGPS IWFNAIVGLT 120
  121 HAASVPPDGP NGTASSYDMF VTQRSHVIQQ AIRQAAGDMR LMNPVSLVEN HSACRTNRAG 180
  181 QRVLPNGQVW KPHLLLLSFA SKILAEANAL LKLQDNIPGR PFAARSKAPP LPFLLSSLLQ 240
  241 SRPQPKLPEQ QYGDEEDEDD LEESSDSDEE SEYDQLPPFK SLTKAQMATL SKSQKKQYLD 300
  301 EMEYREKLLM KKQMKEERKR RKMFKKFAAE IKDLPDGYSE NVEEESGGPA SVPVPMPDLS 360
  361 LPASFDSDNP THRYRYLDSS NQWLVRPVLE THGWDHDIGY EGVNAERLFV VKEKIPISVS 420
  421 GQVTKDKKDA NVQLEMASSV KHGEGKSTSL GFDMQTVGKE LAYTLRSETR FNNFRRNKAA 480
  481 A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.0
Match: 2hjgA
Description: No description for 2hjgA was found.

Predicted Domain #5
Region A:
Residues: [1062-1206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLSVTHLGDS VSAGLKVEDK FIASKWFRIV MSGGAMTSRG DFAYGGTLEA QLRDKDYPLG  60
   61 RFLTTLGLSV MDWHGDLAIG GNIQSQVPIG RSSNLIARAN LNNRGAGQVS VRVNSSEQLQ 120
  121 LAMVAIVPLF KKLLSYYYPQ TQYGQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle