| Protein: | VCS_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 1344 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VCS_ARATH.
| Description | E-value | Query Range |
Subject Range |
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526.0 | [0..45] | [593..824] |
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514.0 | [0..50] | [578..904] |
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506.0 | [0..51] | [549..587] |
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499.0 | [0..44] | [549..987] |
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499.0 | [0..15] | [536..74] |
|
Region A: Residues: [1-98] |
1 11 21 31 41 51
| | | | | |
1 MASSPGNTNP HNTPPFDLGI LFKPSSNPYP PPAASYPPPT GPFLHNQYDQ QHYAPPGISA 60
61 QPSPVTQQQQ DVSSSSAATN LHPQRTLSYP TPPLNLQS
|
| Detection Method: |  |
| Confidence: | 6.0 |
| Match: | 1crzA |
| Description: | TolB, C-terminal domain; TolB, N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [99-436] |
1 11 21 31 41 51
| | | | | |
1 PRSNHNPGTH ILALLNNTNN GAPVANQEPS HQLPVVNHNE IARSFPGGSG PIRVPSCKLP 60
61 KGRRLIGEHA VYDVDVRLQG EIQPQLEVTP ITKYGSDPQL VVGRQIAVNK VYICYGLKGG 120
121 NIRVLNINTA LRSLFRGHSQ RVTDMAFFAE DVDMLASVSL DGKVFVWKIS EGSEGEDQPQ 180
181 ITGKIVLALQ ILGEEDTKHP RVCWHCHKQE ILVVSIGKHV LRIDTTKVGR GEVFSAEAPL 240
241 QCPLDKLIDG VQIVGKHDGE VTDLSMCQWM TTRLVSSSVD GTIKIWQDRK AQPLVVLRPH 300
301 DGHPVSSATF VTSPERPDHI ILITGGPLNR EMKIWVSA
|
| Detection Method: | |
| Confidence: | 75.221849 |
| Match: | 2ovpB |
| Description: | No description for 2ovpB was found. |
|
Region A: Residues: [437-532] |
1 11 21 31 41 51
| | | | | |
1 GEEGWLLPAD AESWRCTQTL DLKSSTEPRA EEAFFNQVIA LSEAGLLLLA NAKRNALYAV 60
61 HLDYGSSPVG TRMDYLSEFT VTMPILSFIG TNDPPE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.608 | d.58.12 | eEF-1beta-like |
| View | Download | 0.608 | d.58.12 | eEF-1beta-like |
| View | Download | 0.570 | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.570 | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.420 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.420 | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.418 | d.58.14 | Ribosomal protein S6 |
| View | Download | 0.388 | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.386 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.381 | d.16.1 | FAD-linked reductases, C-terminal domain |
|
Region A: Residues: [533-1100] |
1 11 21 31 41 51
| | | | | |
1 EPIVKVYCVQ TLAIQQYTLD LCLCLPPPIE NMGLEKSDSS VSREANLVEG MSEPSGLKPT 60
61 DLPSVDSVPK PSIIVNRSES ANKLSFPSAE ATSQAIVPPN GEPKTSGLPS QTSGAGSAYA 120
121 TLPQLPLSPR LSSKLSGYHT PVEAIEPVIP HHELGGKTPS ADYSVDRQMD AVGERNLDVS 180
181 SVEEISRSKD SNVTPDDDVS GMRSPSAFFK HPTHLVTPSE ILMGVSSAEA SITTEDRRDR 240
241 DANIQDVNND PRDTEVEVKE ISEARSTQNG EINDHDETEN CTSENREKVF CSQVSNLSTE 300
301 MARDCYPSTE GTFIPGESKA YGQPIKAGDE SGVDSRGGPA KLLKGKKQKA KNSQGPGLSS 360
361 TSSNVANLAD SFNEQSQSLS HPMTDLLPQL LAMQETMNQV MASQKEMQRQ LSNAATGPIG 420
421 KESKRLEVAL GRMIEKSSKS NADALWARIQ EETVKNEKAL RDHAQQIVNA TTNFMSKELN 480
481 AMFEKTIKKE LAAIGPALAR SVVPVIEKTV SSAITESFQR GIGDKAVNQL DKSVNIKLEA 540
541 TVARQIQAQF QTSGKQALQE GLRSSVES
|
| Detection Method: | |
| Confidence: | 3.30103 |
| Match: | 1sjjA |
| Description: | Cryo-EM Structure of Chicken Gizzard Smooth Muscle alpha-Actinin |
Matching Structure (courtesy of the PDB): |
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|
Region A: Residues: [1101-1244] |
1 11 21 31 41 51
| | | | | |
1 SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA 60
61 LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL LEKVEAPMDP TTELSRLISE 120
121 RKYEESFTSA LQRSDVSIVS WLCS
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| Detection Method: | |
| Confidence: | 21.39794 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [1245-1344] |
1 11 21 31 41 51
| | | | | |
1 QVDLRGLLAM NPLPLSQGVL LSLLQQLACD ISKDTSRKLA WMTDVVAAIN PSDQMIAVHA 60
61 RPIFEQVYQI LHHHRNAPGS DVSAIRLIMH VINSMLMGCK
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| Detection Method: | |
| Confidence: | 9.09691 |
| Match: | 2i1jA |
| Description: | No description for 2i1jA was found. |
