YRC Public Data Repository - Protein Structure Prediction

Protein:	TMN3_ARATH
Organism:	Arabidopsis thaliana
Length:	592 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TMN3_ARATH.

Description	E-value	Query Range	Subject Range
gi\|50758867 - gi\|50758867\|ref\|XP_417455.1\| PREDICTED: similar to Transmembrane 9 superfamily protein member 4 [Gal...	759.0	[0..18]	[592..164]
TMN7_ARATH - Transmembrane 9 superfamily member 7 OS=Arabidopsis thaliana GN=TMN7 PE=2 SV=1	751.0	[0..20]	[592..27]
gi\|53791995, gi\|... - gi\|53793336\|dbj\|BAD54557.1\| putative PHG1A protein [Oryza sativa Japonica Group], gi\|53791995\|dbj\|BA...	748.0	[0..20]	[592..34]
gi\|73989439 - gi\|73989439\|ref\|XP_534172.2\| PREDICTED: similar to Transmembrane 9 superfamily protein member 2 prec...	746.0	[0..18]	[592..32]
gi\|114650498 - gi\|114650498\|ref\|XP_001147580.1\| PREDICTED: transmembrane 9 superfamily member 2 isoform 3 [Pan trog... TM9SF2 - transmembrane 9 superfamily member 2	744.0	[0..18]	[592..33]
TM9S2_PONPY - Transmembrane 9 superfamily protein member 2 precursor - Pongo pygmaeus (Orangutan) TM9S2_PONAB - Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1	744.0	[0..18]	[592..33]
TM9S2_RAT - Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1	743.0	[0..18]	[592..33]
TM9S2_MOUSE - Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=1 SV=1	741.0	[0..18]	[592..33]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLPTTLLLF IGALIFSGAG TVRSDASDHR YKDGDSVPLY ANKVGPFHNP SETYRYFDLP  60
   61 FCIPEGVK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [69-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKKEALGEVL NGDRLVSAPY KLNFRDEKDS EVYCKKKLSR EEVEHFRRAV EKDYYFQMYY  60
   61 DDLPIWGFIG KVDKESKS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [147-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPSEFKYFLY KHIQFEILYN KDRVIEINAR MDPHSLVDLT EDKEVDAEFM YTVKWKETET  60
   61 SFEKRMDKYA MSSSLPHHLE IHWFSIINSC VTVLLLTGFL ATILMRVLKN DFMKYAQDEE 120
  121 AADDQEETGW KYIHGDVFRF PKNKSLFAAS LGSGTQLFTL TIFIFMLSLV GVFYP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [322-461]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YNRGALFTAL VVIYALTSGI AGYTASSFYC QLEGKNWVRN LLLTGGLFCG PLFLTFCFLN  60
   61 TVAIAYSATA ALPFGTIIVI VLIWTLVTSP LLVLGGIAGK NSKAEFQAPV RTTKYPREIP 120
  121 PLPWYRSAVP QMAMAGFLPF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [462-592]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAIYIELYYI FASVWGHRIY TIYSILFIVF IILLIVTAFI TVALTYFQLA AEDHEWWWRS  60
   61 FLCGGSTGLF IYAYCLYYYY ARSDMSGFMQ TSFFFGYMAC ICYGFFLMLG TVGFRAALLF 120
  121 VRHIYRSIKC E

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits