| Protein: | gi|20198000, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 483 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20198000, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
474.0 | [0..30] | [483..30] |
|
|
379.0 | [0..10] | [478..3] |
|
|
378.0 | [0..79] | [478..25] |
|
|
373.0 | [0..24] | [465..2] |
|
|
357.0 | [0..9] | [466..2] |
|
|
357.0 | [0..47] | [477..1] |
|
|
339.0 | [0..34] | [477..3] |
|
Region A: Residues: [1-156] |
1 11 21 31 41 51
| | | | | |
1 MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF 60
61 NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM DMVVAPSNNG FTSSGFTNIP 120
121 SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGS
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [157-231] |
1 11 21 31 41 51
| | | | | |
1 PITLTPSGSC RYDSSLGLLT KKFVNLIKQA KDGMLDLNKA AETLEVQKRR IYDITNVLEG 60
61 IDLIEKPFKN RILWK
|
| Detection Method: | |
| Confidence: | 24.0 |
| Match: | 1cf7A |
| Description: | Cell cycle transcription factor E2F-4 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [232-402] |
1 11 21 31 41 51
| | | | | |
1 GVDACPGDED ADVSVLQAEI ENLALEEQAL DNQIRQTEER LRDLSENEKN QKWLFVTEED 60
61 IKSLPGFQNQ TLIAVKAPHG TTLEVPDPDE AADHPQRRYR IILRSTMGPI DVYLVSEFEG 120
121 KFEDTNGSGA APPACLPIAS SSGSTGHHDI EALTVDNPET AIVSHDHPHP Q
|
| Detection Method: | |
| Confidence: | 28.522879 |
| Match: | 2azeA |
| Description: | Structure of the Rb C-terminal domain bound to an E2F1-DP1 heterodimer |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [403-483] |
1 11 21 31 41 51
| | | | | |
1 PGDTSDLNYL QEQVGGMLKI TPSDVENDES DYWLLSNAEI SMTDIWKTDS GIDWDYGIAD 60
61 VSTPPPGMGE IAPTAVDSTP R
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.807 | b.84.1 | Single hybrid motif |
| View | Download | 0.722 | b.84.1 | Single hybrid motif |
| View | Download | 0.685 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.662 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.655 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.626 | d.82.1 | Copper amine oxidase, domain N |
| View | Download | 0.625 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.548 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.523 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.467 | d.50.1 | dsRNA-binding domain-like |
