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View Structure Prediction Details

Protein: gi|15223738, gi|...
Organism: Arabidopsis thaliana
Length: 171 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15223738, gi|....

Description E-value Query
Range
Subject
Range
gi|8927670, gi|2... - gi|8927670|gb|AAF82161.1|AC068143_3 Contains similarity to a copper homeostasis factor (CCM) mRNA fr...
147.0 [0..4] [171..15]

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Predicted Domain #1
Region A:
Residues: [1-171]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKVVMMKL KVDLNCSKCY KKVKKAIRKF PQITDELFDE KSNTIIIKVV CYDPERLMNK  60
   61 LCYKGDGSIK SIVILEPPKP PQPQPQPPQK PTAPAPAPAQ AQAPALVRPA PVPVLVSSSA 120
  121 PQPMPMWQPY HCGPYYEAQQ YQCYGRPVYE SWGGGRQCCH EDMNSQGCSI M

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.045757
Match: 1qupA
Description: Copper chaperone for superoxide dismutase, C-terminal domain; Copper chaperone for superoxide dismutase, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.246147507070597 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle