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View Structure Prediction Details

Protein: gi|10998141, gi|...
Organism: Arabidopsis thaliana
Length: 439 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10998141, gi|....

Description E-value Query
Range
Subject
Range
gi|5821298 - gi|5821298|dbj|BAA83906.1| SRK13-b [Brassica oleracea]
665.0 [0..1] [438..1]

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Predicted Domain #1
Region A:
Residues: [1-100]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGVTPNYYH SYTFFFFFFV VLLALFLHVF SINTLSSTET LTISSNRTIV SPGNIFELGF  60
   61 FKTTTSSRNG DHWYLGIWYK SISERTYVWV ANRDNPLSKS 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.28
Match: 2dpfA
Description: No description for 2dpfA was found.

Predicted Domain #2
Region A:
Residues: [101-300]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGTLKISYAN LVLLDHSGTL VWSTNLTRTV KSPVVAELLD NGNFVLRDSK GNYQNRFLWQ  60
   61 SFDYPVDTLL PEMKIGRDLK TGHETFLSSW RSPYDPSSGD FSFKLGTQGL PEFYLFKKEF 120
  121 LLYRSGPWNG VGFSGIPTMQ NWSYFDVVNN FIENRGEVAY SFKVTDHSMH YVRFTLTTER 180
  181 LLQISRWDTT SSEWNLFGVL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.221849
Match: 1dlpA
Description: Fetuin-binding protein Scafet precursor
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [301-439]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTEKCDLYQI CGRDSYCDTK TSPTCNCIKG FVPKNVTAWA LGDTFEGCVR KSRLNCHRDG  60
   61 FFLLMKRMKL PGTSTAIVDK TIGLNECKER CSKDCNCTGF ANKDIQNGGS GCVIWTGGAH 120
  121 GYEELRRRRS RSICQNRPL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.971
Match: 1dx5I
Description: Thrombomodulin, different EGF-like domains
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle