| Protein: | H2B2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 243 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for H2B2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
208.0 | [0..117] | [240..1] |
|
Region A: Residues: [1-111] |
1 11 21 31 41 51
| | | | | |
1 MAPRKPKVVS VTKKKKVVEE TIKVTVTEEG DPCVITETAN DQETQDLTFS IPVGENVTTV 60
61 EIPVEVPDER SLPVGENVTT VKIPVDDRDE SSPQPPETPV EVRDEPSPQP P
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.628 | N/A | N/A | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.610 | N/A | N/A | b.1.2 | Fibronectin type III |
| View | Download | 0.601 | N/A | N/A | b.61.4 | Quinohemoprotein amine dehydrogenase A chain, domain 3 |
| View | Download | 0.583 | N/A | N/A | b.1.2 | Fibronectin type III |
| View | Download | 0.530 | N/A | N/A | b.61.2 | Metalloprotease inhibitor |
|
Region A: Residues: [112-243] |
1 11 21 31 41 51
| | | | | |
1 ETPASKSEGT LKKTDKVEKK QENKKKKKKK KRDDLAGDEY RRYVYKVMKQ VHPDLGITSK 60
61 AMTVVNMFMG DMFERIAQEA ARLSDYTKRR TLSSREIEAA VRLVLPGELS RHAVAEGSKA 120
121 VSNFVGYDSR KR
|
| Detection Method: | |
| Confidence: | 35.0 |
| Match: | 1eqzB |
| Description: | Histone H2B |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.73700145395396 | bayes_pls_golite062009 |
| DNA binding | 1.04127970884713 | bayes_pls_golite062009 |
| nucleic acid binding | 0.86554830065808 | bayes_pls_golite062009 |
| transcription regulator activity | 0.57702121108343 | bayes_pls_golite062009 |
| protein binding | 0.260428734715028 | bayes_pls_golite062009 |
