YRC Public Data Repository - Protein Structure Prediction

Protein:	CP31B_ARATH
Organism:	Arabidopsis thaliana
Length:	289 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CP31B_ARATH.

Description	E-value	Query Range	Subject Range
gi\|56758360 - gi\|56758360\|gb\|AAW27320.1\| SJCHGC06322 protein [Schistosoma japonicum]	245.0	[0..14]	[289..93]
gi\|7673355 - gi\|7673355\|gb\|AAF66823.1\|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]	241.0	[0..17]	[289..110]
PABP2_ARATH - Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1	240.0	[0..14]	[289..116]
gi\|76689273 - gi\|76689273\|ref\|XP_881129.1\| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 1 ...	239.0	[0..14]	[289..100]
gi\|48734702 - gi\|48734702\|gb\|AAH71591.1\| PABPC4 protein [Homo sapiens]	238.0	[0..14]	[289..91]
gi\|55959639, gi\|... - gi\|66267552\|gb\|AAH94755.1\| PABPC4 protein [Homo sapiens], gi\|55962217\|emb\|CAI12298.1\| poly(A) bindin... gi\|114555673 - gi\|114555673\|ref\|XP_001170937.1\| PREDICTED: poly A binding protein, cytoplasmic 4 isoform 1 [Pan tro...	238.0	[0..14]	[289..91]
gi\|73976775 - gi\|73976775\|ref\|XP_539581.2\| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 1 ...	238.0	[0..14]	[289..91]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSVLTPSL KLLAMTNSSS STLFCIPSIF NISSSESHRF NFSLSSRPVN LTLSLKSKTL  60
   61 RNSSPVVTFV SQTSNWAEEE EGEDGSIGGT SVTVDESFES EDGVGFPEPP E

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [112-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAKLFVGNLP YDVDSQALAM LFEQAGTVEI SEVIYNRDTD QSRGFGFVTM STVEEAEKAV  60
   61 EKFNSFEVNG RRLTVNRAAP RGSRPERQPR VYDAAFRIYV GNLPWDVDSG RLERLFSEHG 120
  121 KVVDARVVSD RETGRSRGFG FVQMSNENEV NVAIAALDGQ NLEGRAIKVN VAEERTRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.69897
Match:	1po6A
Description:	Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits