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View Structure Prediction Details

Protein: H2B5_ARATH
Organism: Arabidopsis thaliana
Length: 126 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for H2B5_ARATH.

Description E-value Query
Range
Subject
Range
gi|187036007, gi... - gi|39595176|emb|CAE60213.1| Hypothetical protein CBG03777 [Caenorhabditis briggsae], gi|187036007|em...
gi|157745709 - gi|157745709|ref|XP_001667951.1| Hypothetical protein CBG03777 [Caenorhabditis briggsae AF16]
198.0 [0..23] [126..19]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKAEKKPS EKAPKADKKI TKEGGSERKK KTKKSTETYK IYLFKVLKQV HPDIGISGKA  60
   61 MGIMNSFIND TFEKIALESS RLARYNKKPT ITSREIQTAV RLVLPGELAK HAVSEGTKAV 120
  121 TKFTSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.221849
Match: 2cv5D
Description: Crystal structure of human nucleosome core particle
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.581886805340955 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle