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View Structure Prediction Details

Protein: glb-8
Organism: Caenorhabditis elegans
Length: 370 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for glb-8.

Description E-value Query
Range
Subject
Range
CE05316 - WBGene00007741 Globin status:Predicted TR:Q18209 protein_id:CAA96599.1
465.0 [0..1] [370..27]

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Predicted Domain #1
Region A:
Residues: [1-194]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSYRNGKR KSYSAGSITS SSNSTKKNPD FENFFEEPQI KVMLDARRES FLRHSTSAEV  60
   61 FPVAPPDLEV VLERSTKTTP NPTPRTVRKQ LRFDIPEVHI SFETNEPRKV TFEGGSTSNS 120
  121 IVPPPIIDWD STPKMNSVPE IEPILCFDDE VSVTTRRLSA NEKARQNVIA QRRQSNVQLV 180
  181 QSMSGRTTTT TLIP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [195-370]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTCAQIHLVR ALWRQVYTTK GPTVIGASIY HRLCFKNVMV KEQMKQVELP PKFQNRDNFI  60
   61 KAHCKAVAEL IDQVVENLDH LDNVTGELMR IGRVHAKVLR GELTGKLWNT VAETIIDCTL 120
  121 EWGDRRCRSE TVRKAWALIV AFVIEKIKAG HHEQRKLMLG TRQSLPSIRT PSMERF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.30103
Match: 1dxtB
Description: Hemoglobin, beta-chain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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