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View Structure Prediction Details

Protein: glb-8
Organism: Caenorhabditis elegans
Length: 370 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for glb-8.

Description E-value Query
Range
Subject
Range
CE05316 - WBGene00007741 Globin status:Predicted TR:Q18209 protein_id:CAA96599.1
465.0 [0..1] [370..27]

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Predicted Domain #1
Region A:
Residues: [1-194]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSYRNGKR KSYSAGSITS SSNSTKKNPD FENFFEEPQI KVMLDARRES FLRHSTSAEV  60
   61 FPVAPPDLEV VLERSTKTTP NPTPRTVRKQ LRFDIPEVHI SFETNEPRKV TFEGGSTSNS 120
  121 IVPPPIIDWD STPKMNSVPE IEPILCFDDE VSVTTRRLSA NEKARQNVIA QRRQSNVQLV 180
  181 QSMSGRTTTT TLIP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [195-370]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTCAQIHLVR ALWRQVYTTK GPTVIGASIY HRLCFKNVMV KEQMKQVELP PKFQNRDNFI  60
   61 KAHCKAVAEL IDQVVENLDH LDNVTGELMR IGRVHAKVLR GELTGKLWNT VAETIIDCTL 120
  121 EWGDRRCRSE TVRKAWALIV AFVIEKIKAG HHEQRKLMLG TRQSLPSIRT PSMERF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.30103
Match: 1dxtB
Description: Hemoglobin, beta-chain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle