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View Structure Prediction Details

Protein: NHX4_ARATH
Organism: Arabidopsis thaliana
Length: 529 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NHX4_ARATH.

Description E-value Query
Range
Subject
Range
gi|19919844 - gi|19919844|gb|AAM08405.1|AF490588_1 Na+/H+ exchanger 4 [Arabidopsis thaliana]
303.0 [0..1] [529..1]

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Predicted Domain #1
Region A:
Residues: [1-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIGLTEFVT NKLAAEHPQV IPISVFIAIL CLCLVIGHLL EENRWVNESI TAILVGAASG  60
   61 TVILLISKGK SSHILVFDEE LFFIYLLPPI IFNAGFQVKK KKFFHNFLTI MSFGVIGVFI 120
  121 STVIISFGTW WLFPKLGFKG LSARDYLAIG TIFSSTDTVC TLQILHQDET PLLYSLVFGE 180
  181 GVVNDATSVV LFNAVQKIQF ESL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [204-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGWTALQVFG NFLYLFSTST LLGIGVGLIT SFVLKTLYFG RHSTTRELAI MVLMAYLSYM  60
   61 LAELFSLSGI LTVFFCGVLM SHYASYNV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [292-529]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TESSRITSRH VFAMLSFIAE TFIFLYVGTD ALDFTKWKTS SLSFGGTLGV SGVITALVLL  60
   61 GRAAFVFPLS VLTNFMNRHT ERNESITFKH QVIIWWAGLM RGAVSIALAF KQFTYSGVTL 120
  121 DPVNAAMVTN TTIVVLFTTL VFGFLTKPLV NYLLPQDASH NTGNRGKRTE PGSPKEDATL 180
  181 PLLSFDESAS TNFNRAKDSI SLLMEQPVYT IHRYWRKFDD TYMRPIFGGP RRENQPEC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle