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View Structure Prediction Details

Protein: NHX4_ARATH
Organism: Arabidopsis thaliana
Length: 529 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NHX4_ARATH.

Description E-value Query
Range
Subject
Range
gi|19919844 - gi|19919844|gb|AAM08405.1|AF490588_1 Na+/H+ exchanger 4 [Arabidopsis thaliana]
303.0 [0..1] [529..1]

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Predicted Domain #1
Region A:
Residues: [1-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIGLTEFVT NKLAAEHPQV IPISVFIAIL CLCLVIGHLL EENRWVNESI TAILVGAASG  60
   61 TVILLISKGK SSHILVFDEE LFFIYLLPPI IFNAGFQVKK KKFFHNFLTI MSFGVIGVFI 120
  121 STVIISFGTW WLFPKLGFKG LSARDYLAIG TIFSSTDTVC TLQILHQDET PLLYSLVFGE 180
  181 GVVNDATSVV LFNAVQKIQF ESL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [204-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGWTALQVFG NFLYLFSTST LLGIGVGLIT SFVLKTLYFG RHSTTRELAI MVLMAYLSYM  60
   61 LAELFSLSGI LTVFFCGVLM SHYASYNV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [292-529]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TESSRITSRH VFAMLSFIAE TFIFLYVGTD ALDFTKWKTS SLSFGGTLGV SGVITALVLL  60
   61 GRAAFVFPLS VLTNFMNRHT ERNESITFKH QVIIWWAGLM RGAVSIALAF KQFTYSGVTL 120
  121 DPVNAAMVTN TTIVVLFTTL VFGFLTKPLV NYLLPQDASH NTGNRGKRTE PGSPKEDATL 180
  181 PLLSFDESAS TNFNRAKDSI SLLMEQPVYT IHRYWRKFDD TYMRPIFGGP RRENQPEC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle