YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15222136, gi\|...
Organism:	Arabidopsis thaliana
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15222136, gi|....

Description	E-value	Query Range	Subject Range
gi\|2576331 - gi\|2576331\|emb\|CAA05158.1\| SpsA protein [Streptococcus pneumoniae]	183.0	[0..1]	[170..183]
gi\|6469847 - gi\|6469847\|gb\|AAF13456.1\| unknown [Streptococcus pneumoniae] gi\|6469847 - gi\|6469847\|gb\|AAF13456.1\| unknown [Streptococcus pneumoniae]	177.0	[0..1]	[170..345]
gi\|25509405, gi\|... - gi\|8163644\|gb\|AAF73779.1\| surface protein PspC [Streptococcus pneumoniae], pir\|\|H98120 choline bindi... gi\|15459699, gi\|... - gi\|15904036\|ref\|NP_359586.1\| choline binding protein A [Streptococcus pneumoniae R6], gi\|15459699\|gb... gi\|116515359, gi... - gi\|8163644\|gb\|AAF73779.1\|AF154012_1 surface protein PspC [Streptococcus pneumoniae], gi\|116515359\|re...	177.0	[0..1]	[170..345]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKTEPLSN EKNFSKVKKA LSSIPQVRDQ KFEEETNTVT IKVVCCSPEK VMDKLCSKGR  60
   61 GAIKLIETI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	1w9rA
Description:	Solution Structure of Choline Binding Protein A, Domain R2, the Major Adhesin of Streptococcus pneumoniae
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [70-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPAKHVAQKP KEPEKPKEAE KPKEPEKPKP AAAPAQGDPS SQRVTHGYNP PPMMGHPVPW  60
   61 SDGPNYGWSR PNGYDERPIY NSYGGWQPPP SQYGGRSHYE EEQPSCSIM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits