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View Structure Prediction Details

Protein: gi|8953748, gi|1...
Organism: Arabidopsis thaliana
Length: 453 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|8953748, gi|1....

Description E-value Query
Range
Subject
Range
gi|15228863, gi|... - gi|9279699|dbj|BAB01256.1| unnamed protein product [Arabidopsis thaliana], gi|15228863|ref|NP_188920...
581.0 [0..13] [452..9]
gi|92871212 - gi|92871212|gb|ABE80297.1| Protein of unknown function DUF828, plant [Medicago truncatula]
461.0 [0..15] [452..19]

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Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQKSKTIGE QWWRSNPTFK PPETPLDSME FLSRTWSASA TEVSRAVVAS PPTSQPPQMR  60
   61 FSEIQNGSSD VTLVPEDEEN GIVLGNTFSF ASSETSLMVM ERIMAQSPEI SSPRTSGRLS 120
  121 HSSFTDSP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [129-339]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PISPSDIDDF KQFYRVSPSF NGHIRGSSAI PGTAGGSKTV GRWLKDRREK KREETRAQNA  60
   61 QLHAAVSVAG VAAAVAAIAA ATASQSSSGT DEQVAKNDSA VASAATLVAA KCVEAAEIMG 120
  121 ADREHLASVV SSAVNVRSAG DIMTLTAAAA TALRGAAQLK ARALKEVWNI AAVIPVDKGT 180
  181 PKGGGGGYRG GELAPVDNFL GICSKELLAK G

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [340-453]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CELLKRTRKG DLHWKVVSIY INRTKQVILK TKSKHVAGTI TKKKKNVVVG LVKGLPAWPG  60
   61 REMLEGGENL RYFGLKTVEK RVIEFECKSQ REYDLWTQGV SMLLSIASDR KHKC

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 69.244125
Match: PF08458.1
Description: No description for PF08458.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle